Variovorax sp. PMC12: C4F17_02850
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Entry
C4F17_02850 CDS
T05380
Name
(GenBank) DNA polymerase III subunit epsilon
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
vam
Variovorax sp. PMC12
Pathway
vam03030
DNA replication
vam03430
Mismatch repair
vam03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vam00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
C4F17_02850
03430 Mismatch repair
C4F17_02850
03440 Homologous recombination
C4F17_02850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vam03032
]
C4F17_02850
03400 DNA repair and recombination proteins [BR:
vam03400
]
C4F17_02850
Enzymes [BR:
vam01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
C4F17_02850
DNA replication proteins [BR:
vam03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
C4F17_02850
DNA repair and recombination proteins [BR:
vam03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
C4F17_02850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
RNase_H_2
DNA_pol_A_exo1
Motif
Other DBs
NCBI-ProteinID:
AVQ79973
LinkDB
All DBs
Position
1:632352..633074
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AA seq
240 aa
AA seq
DB search
MSRLIVLDTETTGLSAENGDRIIELGCVELFNRKLTGNDLHIYFNPERESHEDALKVHGL
TTDFLRDKPKFATLANDIVEYLRDAELIIHNAAFDVGFLNKEFERAGFPPLRTFVAEVTD
TLAMAKQVYPGKRNSLDALCDRFGVDRSNRTFHGAKLDAQLLADVYINLTRGQDALLIDV
ASNEPEVGTKVVAMDLSQFELPVILAAEHELAAHEGVLAQLDKSSGGRTLFRQNEEKAVA
NT seq
723 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgcttgatcgtcctcgataccgaaaccaccgggctctccgcagagaacggcgac
cgcatcatcgagctcggctgcgtggagctgttcaaccgaaagctcaccggcaacgacctg
cacatctatttcaacccggagcgcgagagccacgaagacgcgttgaaggtccacggcctg
acgaccgatttccttcgcgacaagccgaagttcgccacgctggccaacgacatcgtcgag
tacctgcgcgatgccgaactgatcattcataacgcggccttcgacgtcggcttcctcaac
aaggagttcgagcgcgccggctttcctccgctgcgcaccttcgtggcggaagtgaccgac
acgctggccatggccaagcaggtgtatccgggcaagcgcaactcgctcgatgcgctgtgc
gaccgcttcggcgtcgaccgttcgaaccgcaccttccacggcgccaagctcgacgcccag
ctgctggccgacgtctacatcaacctcacgcgcggacaggatgcgctgctcatcgacgtg
gcctccaacgagcccgaggttgggaccaaggtcgtggccatggacctgagccagttcgag
ttgccggtgatcctggcagcggagcatgaactcgccgcgcacgagggcgtgttggcccag
ctcgacaaatcttctggtggtcgcacgctgtttcgtcaaaacgaagaaaaagctgtggca
taa
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