Variovorax sp. PMC12: C4F17_03065
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Entry
C4F17_03065 CDS
T05380
Name
(GenBank) ribosome biogenesis GTPase Der
KO
K03977
GTPase
Organism
vam
Variovorax sp. PMC12
Brite
KEGG Orthology (KO) [BR:
vam00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
vam03009
]
C4F17_03065
Ribosome biogenesis [BR:
vam03009
]
Prokaryotic type
GTPases
C4F17_03065
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MMR_HSR1
FeoB_N
KH_dom-like
GTP_EFTU
AIG1
Dynamin_N
RsgA_GTPase
Roc
AAA_22
ABC_tran
SRPRB
Motif
Other DBs
NCBI-ProteinID:
AVQ80014
LinkDB
All DBs
Position
1:682246..683589
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AA seq
447 aa
AA seq
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MKPVVALVGRPNVGKSTLFNRLTQTRDAIVADFAGLTRDRHYGNGRLGKHEFIVIDTGGF
EPDAGSGIYKEMAKQTRQAVAEADVVIFVVDAREGLSAQDHEIANELRRLGKPCVLAANK
AEGMHDGTKLVDFYELGFGDVHGVSAAHGQGMRDLVELALEPLNLPDPDDESDEDEVNKP
IKLAVAGRPNVGKSTLINTWLGEERLVAFDMPGTTRDAISVPFERNGQRFELIDTAGLRR
KGRVFEAIEKFSVVKTLQAIESANVVLLLLDATQGVTDQDAHIAGYILESGRAVVIAINK
WDAVDSYQREQIQRQIETRLPFLKFAALHFISAIKRQGLGPVWQAIAQAHKSATRKMSTP
VLTRLLLEAVQFQAPKRGGMYRPKLRYAHQGGMNPPVIVIHGNSLEHVTDAYKRFLEGRF
RKEFDLVGTPLRIEFKSSHNPFADKDD
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atgaagccggtcgtggccctggtcgggcgtcccaacgtcggcaagtcgacgctgttcaat
cgcctgacccagacgcgcgacgccatcgtcgccgatttcgccggcctcacgcgcgaccgc
cactacggcaacggtcgcctgggcaagcacgagttcatcgtgatcgacaccggcggcttc
gagcccgatgccggcagcggcatctacaaggaaatggccaagcagacgcggcaggccgtg
gctgaggccgacgtggtgatcttcgtcgtcgatgcccgcgaaggcctgtcggcgcaagac
catgagatcgccaatgagctgcgccgtctgggcaagccctgcgtgctcgcggccaacaag
gccgagggcatgcacgacggcaccaagctcgtggatttctacgagctgggcttcggcgac
gtgcacggggtttccgcagcgcacgggcaaggcatgcgcgacctggtcgagcttgcgctt
gagccgctgaacctgcccgatccggatgacgagtcggacgaggacgaagtcaacaagccg
atcaagctggcagtggcggggcggcccaacgtgggcaagtcgacgctgatcaacacctgg
cttggcgaagagcgactggtggcattcgacatgccaggcaccacgcgcgacgcgatttca
gtgcccttcgagcgcaacggccagcgcttcgaactgatcgacacggccggcttgcgccgc
aagggcagggtgttcgaggcgatcgagaaattctcggtggtcaagacgctgcaggccatc
gaatcggccaatgtggtgctgctgctgctcgacgccacgcagggcgtgaccgaccaggat
gcccacatcgcgggctacatcctcgaaagcggccgcgcggtggtgatcgccatcaacaag
tgggacgcggtcgacagctaccagcgcgagcagatccagcggcagatcgaaacccggttg
ccgttcctgaagttcgcggcattgcatttcatctcggccatcaagcgccagggccttggc
ccggtttggcaggcaattgcgcaggcccacaagtcggccacgcgcaagatgtcgacgccg
gtgctgacccggttgctgctggaggcggtgcagttccaggctcccaagcgcggcggcatg
tacaggcccaagctgcgttatgcgcaccagggtggcatgaatccgccggtgatcgtgatc
cacggcaattcgctcgaacatgtgaccgatgcttacaagcgcttcctcgagggacgcttc
cgcaaggaattcgacctggtgggtaccccgttgcggatcgaattcaagagctcccacaat
ccttttgccgacaaggacgactga
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