Variovorax sp. PMC12: C4F17_03490
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Entry
C4F17_03490 CDS
T05380
Name
(GenBank) exonuclease
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
vam
Variovorax sp. PMC12
Brite
KEGG Orthology (KO) [BR:
vam00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vam03400
]
C4F17_03490
Enzymes [BR:
vam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C4F17_03490
DNA repair and recombination proteins [BR:
vam03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
C4F17_03490
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDDEXK_1
Cas_Cas4
Motif
Other DBs
NCBI-ProteinID:
AVQ80089
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All DBs
Position
1:762662..765217
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AA seq
851 aa
AA seq
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MNEGHPVQALWCDPADGIVARIVRALAERQVHAARTVVLVPYAQLMGVARAMWARCGSAG
FVPRFETTHNWARSAGGFVPSGYDIAHDMARDLVTAQALLSQAGFSAERFALAGRLVELA
YQLVPLASAVSPDERVGEWAARAAQVAEAGSESEWFRTESALIRIAVAWVATSGYATDVL
QRESTRAQVDALLVLEGFQTDPLTQALCALWGDRALRLSLVPADTRPEAAASHVALDPED
EAELAAACVLRHLAEDRAPVALVATDRALTRRISAQLKAQGVITHDETGWKLSTTRAAAT
LMSSLRACAHDASSDQVLEWLKSGADGDALVVQSLEARLRREGVRDWSAWCALVARSEKS
HDAALLSFTEAIEERRAPMMRSRPLAEWLRALRELLEAGDQWEPLSEDMAGGKVIAALWL
DAGAHGDDEEFPGGRHTLAEFTAWVRDVLEDASFVPPAGDQAPKVVVLPLYQLLGRGFGA
VVIPGCDDRRLPASPEPPGNWSAAQRADLGLPSREALEAAQRAAWAMALHNPSCELLWRQ
SDANGEPVRPSPLVQALQLDHALRPATDPRSPREVAVQPTEYPKPSGALLPLQNISTSVY
EDLRRCPYRFFALRQLGLRSADELDAEVDKRDFGNWLHAVLGHFHQALTEAPTQDAQERA
AFIEEAARRATRELGLSDAEFLPFAAAWPAVRDGYLHWLTGHEASGAVFVESEPWKEQPL
GDLRLIGRLDRIDRMPDGQPFVIDYKTESASVSKERVKDPTEDTQLAFYAALVADDTLRA
AYVNVGEKSSGTQTVEQPAVVEARDALVAGIIHDFTRIAQGAPLPPLGEGAVCDYCAARG
LCRKDFWEVAQ
NT seq
2556 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaaggccaccccgtccaggccctgtggtgcgaccccgccgacggcatcgtcgcg
cggatcgtccgcgcgctcgccgagcgccaggtgcacgctgcccgcacggtggtgctggtg
ccctatgcgcagctgatgggcgtggcgcgcgccatgtgggcccgctgcggcagcgccggc
ttcgtgccgcgcttcgagaccacgcacaactgggcccgcagcgccggcggcttcgtgccc
tccggctacgacatcgcgcacgacatggcgcgcgacctcgtcaccgcgcaggccctgctg
tcgcaggccggtttcagcgccgagcgcttcgcactggccggccgcctggtcgaactggcc
taccaactggtgccgctcgcgtccgccgtgtcgccggacgagcgcgtgggcgaatgggcc
gcgcgcgcggcgcaggtggcggaggcgggcagcgagtccgagtggttccgcaccgagagc
gcgctgatccgcattgccgtggcgtgggtcgccacctccggctacgccacggacgtgctc
cagcgcgagagcacgcgcgcgcaggtcgatgcactcctcgtgctcgagggcttccaaacc
gatccgctcacgcaggccctgtgcgccctgtggggtgaccgggcgctgcgcctgtcgctg
gtgccggccgatacgcggcctgaagccgcggcctcgcatgtggcactcgacccggaggac
gaagccgaactcgcggccgcctgcgtgctgcgccacctggccgaagaccgtgcgccggtc
gcgctggtggcgaccgaccgcgcgctcacacgccgcatcagcgcacagctcaaggcgcag
ggcgtcatcacccacgacgagaccggatggaaactttcgaccacgcgcgccgccgccacg
ctgatgagttcgctgcgcgcctgcgcccatgacgccagcagcgaccaggtgctcgaatgg
ctcaagagcggcgccgacggtgatgcgctggtcgtccagtcgctcgaggcccgcctgcgc
cgcgaaggcgtgcgcgactggtccgcgtggtgcgcgctggtggcgcgcagcgagaagtcg
cacgacgccgcgctgctgagcttcaccgaagccatcgaggaacgccgcgcaccgatgatg
cgatccaggcccctggccgaatggctgcgcgcgctgcgcgagctgctggaggcgggcgac
cagtgggagccgctcagcgaggacatggccggcggcaaggtcattgccgcactgtggctc
gacgccggcgcccatggcgacgacgaagaattccccggtggccgccatacgctcgccgag
ttcaccgcctgggtccgcgacgtgctcgaagacgcgagcttcgtgccgcccgccggcgac
caggccccgaaggtcgtcgtgctgccgctttaccaactgctgggccgtggcttcggcgcg
gtcgtcatccctggctgcgacgaccggcgcctgcctgcatcgccggagccgcccggcaac
tggagcgccgcgcagcgcgccgatctcggcctgccttcgcgcgaagcactcgaggccgca
cagcgcgcggcctgggccatggcgctgcacaacccgtcgtgcgagctgctctggcgccag
tccgacgccaacggcgagcccgtgcgcccgagcccgctggtgcaggccttgcaactcgac
cacgccttgcgtcccgccaccgacccgcgttccccgcgcgaagtggccgtgcagccgacc
gaataccccaagccttcaggcgcgctgctgccgctgcagaacatctcgaccagcgtgtac
gaagacctgcgccgctgcccctatcgcttcttcgcgctgcggcagctcggcctgcgcagc
gccgacgagctcgatgccgaggtcgacaagcgcgacttcggcaactggctgcacgccgtg
ctcggccacttccaccaggcgctgaccgaagccccgacgcaggacgcgcaggagcgcgcc
gcgttcatcgaggaggccgcgcgccgggccacgcgggagctcggcttgtccgatgccgag
ttcctgccgttcgcggcggcttggcccgcggtgcgcgacggctatctccattggctgacg
ggccacgaagccagcggcgcggtgttcgtcgagtccgagccctggaaggagcagccgctg
ggcgacctgcgcctgatcggccggctcgaccgcatcgaccgcatgcccgatggccagccc
ttcgtgatcgactacaagaccgagtccgcctccgtcagcaaggagcgcgtgaaagacccg
accgaagacacccagctggccttctacgcggcgctggtggccgacgacaccctgcgcgcg
gcctacgtgaacgtgggggagaagtcctcggggacgcagaccgtcgagcagccggccgtg
gtggaggcgcgtgacgcactggtcgccggcatcatccacgacttcacgcgcatcgcccag
ggggcgccgctgccgccattgggagagggcgccgtctgcgactactgcgcggcgcgcggc
ctctgccgcaaggacttctgggaggtggcgcaatga
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