Variovorax sp. PMC12: C4F17_04265
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Entry
C4F17_04265 CDS
T05380
Name
(GenBank) cysteine desulfurase
KO
K11717
cysteine desulfurase / selenocysteine lyase [EC:
2.8.1.7
4.4.1.16
]
Organism
vam
Variovorax sp. PMC12
Pathway
vam00450
Selenocompound metabolism
vam01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
vam00001
]
09100 Metabolism
09106 Metabolism of other amino acids
00450 Selenocompound metabolism
C4F17_04265
Enzymes [BR:
vam01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.1 Sulfurtransferases
2.8.1.7 cysteine desulfurase
C4F17_04265
4. Lyases
4.4 Carbon-sulfur lyases
4.4.1 Carbon-sulfur lyases (only sub-subclass identified to date)
4.4.1.16 selenocysteine lyase
C4F17_04265
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Gene cluster
GFIT
Motif
Pfam:
Aminotran_5
Aminotran_1_2
Beta_elim_lyase
DegT_DnrJ_EryC1
Cys_Met_Meta_PP
SelA
Motif
Other DBs
NCBI-ProteinID:
AVQ84463
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Position
1:915715..917550
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AA seq
611 aa
AA seq
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MASAMFSEVPGAQFPANVAPPGSPLVSPAGFGPSVPGTPIPQGHIPGANLVPASPTQLPS
LANRAPALLPHAVAGNGVPDSVLSVAPAFEPRSGGSVLGVPQQVNAPSAPQPAASPFYFV
GNSFGHPSAGATQGIAIHDPFAGLEMPQPAAPVSPPSPSMAPAGRDAQFYFVDAVRLPNG
FVTPAKPDPRGPDAVPLAGSGQHPPFDVHAVRRDFPILKERVNGKQLVWFDNAATTHKPQ
SVIDRIAYFYEHENSNIHRAAHELAARATDAYEGARERVRKFINAPEVEEVIFVRGTTEA
INLVAKSWGGQHVGEGDEIIVSNLEHHANIVPWQQLAAAKGAKLRVIPVDDSGQVLLDEY
RKLLNDRTKIVAVTQVSNALGTVVPVKEIVELAHRAGARALVDGAQSVSHMRVDVQDIGA
DFFVFSGHKVFGPTGIGVVWGKREVLEDMPPWQGGGNMIADVTFEKTVFQPIPNKFEAGT
GNIADAVGLGAAIDYVNKVGIENIARYEHDLLVYGMAQLGAIPGVRLIGTAADKASVMSF
VLDGYATEEVGHALNDEGIAVRTGHHCAQPILRRFGVETTVRPSLAFYNTFDEIDRLVAV
VRRLAGQRRAG
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atggccagcgccatgttctccgaggtgccgggcgcgcagtttcccgccaacgtcgcgccg
ccgggctcgccgctggtgagccccgcgggcttcgggccgagcgtgccgggcaccccgatt
ccgcaggggcatattccgggcgccaacctggtgccggcatcgcccacgcagttgccgtcg
cttgccaatcgcgcgcctgccttgctgccgcatgcggtggcgggcaacggcgtgccggac
agcgtgctgtcggtggcgccggctttcgagccgcgctcgggcggctcggtgctgggcgtg
ccgcagcaggtgaatgcgccttcggcaccgcagccggcagcgtcgccgttctacttcgtg
ggcaacagcttcgggcatccttccgctggcgccacgcagggcattgcaattcacgatccg
ttcgctggccttgaaatgccgcaaccggctgcgccggtttcgccgccgagcccgtcgatg
gcgcccgccggtcgcgacgcacagttctatttcgtcgatgcggtgcgcctgcccaacggc
ttcgtcacgccggccaagcccgatccgcgcggccctgacgccgtgccactggcgggcagc
ggccagcatccgccgttcgacgtccatgccgtgcggcgagactttccgatcctcaaggag
cgggtgaacggcaagcagctcgtgtggttcgacaacgcggccaccacgcacaagccgcag
tctgtcatcgaccgcatcgcgtatttctacgagcacgagaactcgaacatccatcgtgcc
gcccatgaactggccgcgcgcgcaaccgacgcctatgaaggtgcgcgcgaacgcgttcgc
aagttcatcaacgcgccggaagttgaagaggtgatcttcgtgcgcggcaccaccgaggcc
atcaacctcgtggccaagagctggggcgggcagcacgtgggcgagggcgacgagatcatc
gtctccaacctcgaacatcacgccaacatagtgccttggcagcagctagccgcggccaag
ggcgcgaagctgcgcgtgattccggtggacgattcgggccaggtgctgctcgacgaatac
cgcaagctgctcaacgaccgcacgaagatcgtggccgtcacgcaggtgtcgaatgcgctg
ggcacggtggtgcctgtgaaggagatcgttgaattggcgcaccgcgcgggtgccagggcg
ctggtcgacggcgcgcagtcggtatcgcacatgcgcgtggacgtgcaggacatcggcgcc
gatttcttcgtcttctccggccacaaggtgttcggtccgaccggcatcggcgtggtctgg
ggcaagcgtgaagtgctcgaagacatgcctccgtggcagggcggcggcaacatgattgcc
gacgtgaccttcgagaaaaccgtgttccagccgatcccgaacaagttcgaggccggcacc
ggcaacatcgccgacgcggtgggcctgggcgcggcgatcgactacgtcaacaaggtcggc
atcgagaacatcgcgcgctatgagcatgacctgctggtgtacggcatggcgcagctcggc
gcgatccctggcgtgcggctgatcggcacggcggccgacaaggccagcgtgatgtccttc
gtgctcgacgggtacgccaccgaggaagtgggccatgcgctgaacgacgaaggaatcgcg
gtgcgcaccggccaccactgcgcgcagccgatcctgcggcgcttcggcgtcgagaccacg
gtgcggccgtcgctggcgttctacaacaccttcgacgagatcgatcggctggtggctgtg
gtgcggcggctggcggggcagcggcgggcagggtag
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