Variovorax sp. PMC12: C4F17_04870
Help
Entry
C4F17_04870 CDS
T05380
Name
(GenBank) RNA-binding transcriptional accessory protein
KO
K06959
protein Tex
Organism
vam
Variovorax sp. PMC12
Brite
KEGG Orthology (KO) [BR:
vam00001
]
09190 Not Included in Pathway or Brite
09192 Unclassified: genetic information processing
99973 Transcription
C4F17_04870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tex_central_region
Tex_YqgF
Tex_N
HHH_3
HHH_9
S1
YqgF
HHH_7
S1_RRP5
T2SSK
DUF460
HHH_6
Motif
Other DBs
NCBI-ProteinID:
AVQ80341
LinkDB
All DBs
Position
1:1058925..1061300
Genome browser
AA seq
791 aa
AA seq
DB search
MQKIIRQLAAEIKVGENQVKAAVELLDGGATVPFIARYRKEATDGLDDTQLRELEARLSY
LRELEDRRVAVLKAIDEQGKLTPELRAAIEFAPTKQELEDLYLPFKQKRRTKGQIAREFG
IEPLADKLLADPTLDPAVEAKAFLQPATTLDDGKPGPDFSTVPLVLDGVRDILSERWAED
AALVQGLREWLWAEGLLKSSLMSGKDENNADVAKFRDYFEYDEPIGRVPSHRALAVFRGR
ALDILDAKLVLPVEPEPGKPSIAEGRIALHLGWSHAGRPADDLLRKCVAWTWRVKLALST
ERDLFTRLREEAEKVAIKVFADNLRDLLLAAPAGPRVVMGLDPGIRTGVKVAVVDSTGKL
VETATVFPHEPRKDWEGSLHTLGKLCAKHGVNLIAIGNGTASRETDKLAADLIKLLAKMA
AQAGAPEIKVDKVVVSEAGASVYSASEFASQEMPDVDVSLRGAASIARRLQDPLAELVKI
DPKSIGVGQYQHDVNQSELARTLQAVVEDCVNSVGVDLNTASVPLLSRVSGLSASVAKAV
VRWREANGAFATRKQLLDVTGFGPKAFEQSAGFLRIRGGTDPLDVTGVHPETYPLVEQII
VKTGKPIAELMGRAEMLKTLKPELFANEKFGVITVKDILGELEKPGRDPRPDFKVARFND
GVDDIADLKEGMILEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSHKFVNDAREVVKTGDI
VKVKVMEVDVARKRIGLSMKLDAAPARRDGPRDNRFEGAGRGQQQQGRRDNSPQPAGQMA
SAFAKLQGLRK
NT seq
2376 nt
NT seq
+upstream
nt +downstream
nt
atgcagaaaatcattcgccagctcgccgccgaaatcaaggtcggcgagaaccaggtgaag
gccgccgtcgaactgctcgacggaggcgccacggttccgttcatcgcccgctaccgcaag
gaagccaccgacggcctcgacgacacgcagctgcgtgagcttgaagcccgcctttcctac
ctgcgcgaactcgaagaccgccgcgtggcggtgctcaaggccatcgatgaacaaggcaag
ctgacccccgagctgcgtgccgcgatcgaattcgcgccgaccaagcaggagctggaagac
ctctacctgccgttcaagcagaagcgacgcaccaagggccagatcgcccgcgaattcggc
atcgagcccctagccgacaagctgctggccgaccccacgctcgaccccgcggtggaagcc
aaggccttcctgcagcccgccaccacgctggacgacggcaagccgggccccgatttctcc
accgtgccgctcgtgctcgacggcgtgcgcgacattctttccgagcgctgggccgaagac
gccgccctggtgcagggcctgcgcgaatggctctgggccgaaggcctgctcaagtccagc
ctgatgtccggcaaggacgagaacaacgccgacgtcgccaagttccgcgactacttcgag
tacgacgagcccatcggccgcgtgccgtcgcaccgtgcgctggccgtgttccgcggccgc
gcgctcgacatcctcgatgccaagctggtgctgccggtcgagcccgagccgggcaagccc
agcatcgccgaaggccgcatcgcgctgcacctgggctggagccatgccggccgcccggcg
gacgacctgctgcgcaagtgcgtggcctggacctggcgcgtcaagctggcgctgtcgacc
gagcgcgacctgttcacccgcctgcgcgaagaggccgagaaggtcgccatcaaggtgttc
gccgacaacctgcgcgacctgctgctggccgcgcccgccggcccgcgcgtcgtgatgggc
ctggaccccggcatccgcaccggcgtgaaggtggccgtggtcgattccaccggcaagctg
gtcgagaccgccaccgtgttcccgcacgagccgcgcaaggactgggaaggctcgctgcac
acgctgggcaagctgtgcgccaagcacggcgtgaacctgatcgccatcggcaacggaacc
gccagccgcgagaccgacaagctggccgccgacctcatcaagctgctggccaagatggcc
gcgcaggccggcgcgcccgagatcaaggtcgacaaggtggtggtgagcgaggccggcgcc
tcggtgtattcggccagcgaattcgcctcgcaggaaatgcccgacgtcgacgtgagcctg
cgcggcgccgcctccatcgcgcgacgcctgcaagaccccctggccgagctcgtgaagatc
gaccccaagagcatcggcgtgggccagtaccagcacgacgtgaaccagagcgaactcgcc
cgcaccctgcaggccgtggtcgaagactgcgtgaactcggtgggcgtggacctgaacacc
gcgagcgtgccgctgctcagccgcgtgtcgggcctgtcggccagcgtggccaaggcggtg
gtgcgctggcgcgaggcgaacggtgccttcgccacccgcaagcaactgctggacgtgacc
ggcttcggccccaaggccttcgagcagagcgcgggcttcctgcgcatccgcggcggcacc
gatccgctggacgtgaccggcgtgcaccccgaaacctatccgctggtcgagcagatcatc
gtgaagaccggcaagcccatcgccgagctgatgggccgcgccgagatgctcaagacgctg
aagcccgagctgttcgccaacgagaagttcggcgtcatcacggtcaaggacatcctgggc
gaactggagaagcccggccgcgacccgcgccccgacttcaaggtggcgcgcttcaacgac
ggcgtggacgacatcgccgacttgaaggagggcatgatcctcgagggcaccgtgagcaac
gtggcccagttcggcgccttcgtcgacctcggcgtgcaccaggacggcctggtccacgtg
agccagctgagccacaagttcgtgaacgacgcgcgcgaagtcgtcaagaccggcgacatc
gtcaaggtcaaggtgatggaagtggacgtggcgcgcaagcgcatcggcctgtcgatgaag
ctcgatgcggcgcccgcgcgccgcgacggcccgcgcgacaaccgcttcgaaggcgcggga
cgcggccagcagcagcaaggccgccgcgacaactcgccgcagccggcagggcagatggcc
agcgctttcgccaagctgcaggggctgcgcaagtaa
DBGET
integrated database retrieval system
