Variovorax sp. PMC12: C4F17_05550
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Entry
C4F17_05550 CDS
T05380
Name
(GenBank) ATP-dependent DNA helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
vam
Variovorax sp. PMC12
Pathway
vam03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vam00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
C4F17_05550
09124 Replication and repair
03420 Nucleotide excision repair
C4F17_05550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vam03021
]
C4F17_05550
03036 Chromosome and associated proteins [BR:
vam03036
]
C4F17_05550
03400 DNA repair and recombination proteins [BR:
vam03400
]
C4F17_05550
Enzymes [BR:
vam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
C4F17_05550
Transcription machinery [BR:
vam03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
C4F17_05550
Chromosome and associated proteins [BR:
vam03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
C4F17_05550
DNA repair and recombination proteins [BR:
vam03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
C4F17_05550
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
ResIII
HBB
HyfI_C
Motif
Other DBs
NCBI-ProteinID:
AVQ80461
LinkDB
All DBs
Position
1:complement(1215946..1218243)
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AA seq
765 aa
AA seq
DB search
MESESPLPVAHTVSVKALCAFGAKAGDLDLRFVPAPSALEGMAGHALVQHRRGGDYECEV
GLEATCGGVHVRGRADGYEFHKARVEEIKTFRGDFDAIRGNHRALHWAQARTYGWMLCER
DGHDEMTVALVYFDIATGDETVLEEHHTREALREHFELLCGRYAAWAESEAAHRAALDGT
LAALAFPYGSFRAGQRELAEAVYRAGAGGRCLMAQAPTGIGKTLATIFPLLKARAARRID
KLFFLTAKTSGRPVALDALRVLDKGRGQGRLRVLELAAREKVCEYSDRACHGDACPLAKG
FYDRLPAAREQAAQVAWLDRQALRDIGLAHEVCPYFLAQEMAHWADAIVGDYNYYFDSSA
FLYATMREADWRAAVLVDEAHNLLERARGMYTAELDGGALEEAHRVAPAVLRGPLARVFR
EWDTVQQSQQAGYETGDEIPERFLRTLQAANTAMAEHFAATPDASQGPLQRFFFDALHFA
RLAEAFGDHSVFERTLGATQQARRLAIRNLVPAPFLQGRFVEAASVTCFSGTLSPFEFYR
DALGLPEDTALLDVASPFHSAQLRVEVAMDVSTRFRDRAGSLRNVADIIGAQFERLPGNY
LAFFSSFDYLEKACAAFSMRHPGVPVWTQTRGMREAERHGFIARFEEGGQGIGFAVLGGA
FGEGIDLPGSRLIGAFVASLGLPQYNELNEITRERMQARFGKGYEYTYLYPGLQKVVQAA
GRVIRTEEDRGVLHLLDDRFARAEIRELLPRWWHVRMAGDADGAQ
NT seq
2298 nt
NT seq
+upstream
nt +downstream
nt
atggaatccgaatccccccttccggtcgcgcataccgtctccgtcaaggccctgtgcgcc
ttcggcgcgaaggcgggcgacctcgaccttcgcttcgtgcccgcgcccagcgcgctcgaa
ggcatggccggccacgcgctggtgcagcaccggcgcggcggcgactatgaatgcgaggtc
gggctcgaagccacctgcggcggcgtgcatgtgcgcggccgcgccgacggctatgaattc
cacaaggcaagggtggaagagatcaagaccttccgaggcgacttcgacgccatccgcggc
aaccaccgcgcgctgcactgggcgcaggcccgcacctacggctggatgctctgcgagcgg
gacggccatgacgagatgaccgtcgcgctggtctatttcgacatcgcaacaggcgacgag
accgtgctggaggagcaccacacccgcgaggcactgcgcgagcacttcgagctgctgtgc
ggccgctatgccgcctgggccgaaagcgaagccgcgcaccgcgccgcgctggacggcacg
ctggccgcgcttgcgtttccgtacggcagcttccgcgcgggccagcgcgaactggcggag
gccgtctatcgcgccggcgccggcgggcgctgcctcatggcgcaggcgcccaccggcatc
ggcaagacgctggccaccatcttcccgctgctgaaagcgcgtgccgcccgcaggatcgac
aagctgttcttcctcacggccaagacttcgggccggccggtggcgctcgatgcgctgcgg
gtgctcgacaaggggcgcggccagggccggctgcgcgtgctcgaactcgcggcgcgcgaa
aaagtctgcgaatactccgaccgcgcctgccacggcgacgcatgcccgctcgccaagggc
ttctacgacaggctgcccgccgcgcgcgagcaggccgcgcaggttgcgtggctcgaccgc
caggcgctgcgtgacatcggcctcgcgcacgaggtctgtccttatttcctcgcgcaggaa
atggcgcactgggccgacgccatcgtcggcgactacaactactacttcgacagcagcgcc
tttctctacgccaccatgcgcgaggccgactggcgcgccgccgtgctggtggacgaggcc
cacaacctgctcgaacgcgcacgcggcatgtacaccgccgagctcgacggcggcgcgctg
gaggaagcccaccgggtggccccggccgtgttgcgcggcccgctggcccgcgtgttccgc
gagtgggacaccgtgcagcagtcgcagcaggccggctacgaaaccggcgacgagatcccc
gagcgctttcttcgcaccctgcaggcggccaacaccgccatggccgagcacttcgcggcc
acgcccgacgcctcgcaggggccgctgcagcgcttcttcttcgacgcgctgcatttcgcg
cggctggccgaggccttcggcgatcactccgtgttcgagcgcacgctgggcgccacgcag
caggcgcgcaggctggcaatccgcaacctggtgccggcgccgttcctgcaggggcgcttc
gtggaggcggcgtcggtcacctgtttctcgggcacgctgtcgcctttcgagttctaccgc
gacgccctcggcctgcccgaagacaccgcgctgctcgacgtggcctcgccgttccacagc
gcgcaactgcgcgtcgaggtggccatggacgtgtcgacgcgctttcgcgaccgcgcgggc
tcgctgcgcaatgtggcggacatcatcggcgcgcagtttgagcgcctgccgggcaactac
ctcgcgttcttcagcagcttcgactacctggagaaagcctgcgccgccttctcgatgcgg
caccccggcgtgccggtgtggacgcagacccgcggcatgcgcgaggccgagcgccacggc
ttcatcgcgcgcttcgaggaaggcgggcagggcatcggcttcgcggtgctgggcggcgcg
ttcggcgagggcatcgacctgccgggcagccggctcatcggcgccttcgtggccagcctg
gggctgccgcaatacaacgagctcaacgagatcacccgcgagcgcatgcaggcgcgcttc
ggcaagggctacgagtacacctacctctacccgggcctgcagaaggtggtgcaggccgcc
ggccgcgtgatccgcaccgaggaagaccggggcgtgctgcatctgctggacgaccgcttc
gcgcgcgccgagatccgcgaactgctgccgcgctggtggcacgtgcggatggccggggac
gcagatggcgcgcaatga
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