Variovorax sp. PMC12: C4F17_05715
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Entry
C4F17_05715 CDS
T05380
Name
(GenBank) hypothetical protein
KO
K03286
OmpA-OmpF porin, OOP family
Organism
vam
Variovorax sp. PMC12
Brite
KEGG Orthology (KO) [BR:
vam00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
vam02000
]
C4F17_05715
Transporters [BR:
vam02000
]
Other transporters
Pores ion channels [TC:
1
]
C4F17_05715
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OMP_b-brl
OmpA_membrane
Opacity
DUF5777
OMP_b-brl_2
Motif
Other DBs
NCBI-ProteinID:
AVQ80490
LinkDB
All DBs
Position
1:1249201..1249863
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AA seq
220 aa
AA seq
DB search
MIPTTPTRNFILTKTQACTVLAALLLGTASMGACAAGPAQDTGLYVGGSVGRSSYSLSSS
NTVPTPWGGQKASKAGTAYKLYGGYRLTENFGVEVGYARLGRVSQWTAAGLGYSSLQSGT
GQAFYAAATARLPLGDAFALNGRLGVSRGRISGGDNNNTVNWWQPGGQRFSGSSTGLMAG
FGAEYRMTQNLAITADYDYFGKLSKQAKGGMLSVGLKASF
NT seq
663 nt
NT seq
+upstream
nt +downstream
nt
atgatcccaacgactccaaccaggaatttcatcttgacgaaaacgcaagcctgcaccgtc
ctcgccgcacttctgctcggcaccgcatccatgggcgcctgcgccgccggccccgcacag
gacaccggtctctacgtgggcggctccgtcggccgttcgagctacagcctctcttcttcc
aacaccgtgcccaccccgtggggcggccagaaagccagcaaggccggcacggcctacaag
ctgtacggcggctatcgcctgacggaaaacttcggcgtggaagtcggctacgcgcgcctc
ggccgcgtgagccagtggacggcggcgggcctgggctactccagcctgcagagcggcacc
ggccaggccttctacgcggccgccacggcacgcctgccactgggcgatgccttcgcgctc
aacggccgcctcggtgtttcgcgcggccgcatctccggcggcgacaacaacaataccgtc
aactggtggcaacccggcggccagcgcttctcgggcagctcgaccggcctcatggccggc
ttcggcgccgaataccgcatgacgcagaacctcgcgatcaccgccgactacgactacttc
ggcaagctgtcgaagcaggccaaggggggcatgctgtcggtggggttgaaggcgagcttc
tag
DBGET
integrated database retrieval system
