Variovorax sp. PMC12: C4F17_06090
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Entry
C4F17_06090 CDS
T05380
Name
(GenBank) Cro/Cl family transcriptional regulator
KO
K21686
XRE family transcriptional regulator, fatty acid utilization regulator
Organism
vam
Variovorax sp. PMC12
Brite
KEGG Orthology (KO) [BR:
vam00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
vam03000
]
C4F17_06090
Transcription factors [BR:
vam03000
]
Prokaryotic type
Helix-turn-helix
XRE family
C4F17_06090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ScfRs
Peptidase_M78
HTH_3
HTH_31
HTH_19
HTH_26
HTH_25
HTH_24
HTH_37
DUF2975
Motif
Other DBs
NCBI-ProteinID:
AVQ80558
LinkDB
All DBs
Position
1:1328733..1330154
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AA seq
473 aa
AA seq
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MSKTFMGVRLRKLRAERGLTQVALAQALGLSPSYLNQLEQNQRPLTVAVLLRISRTLGVD
VQQFSEDEEARLVSSMRDALADNPGGEAVALPELREVASQMPAVARALLALHRRHQEAME
RLEIMAGELGDGRGELTNARPMPFEAVRDFFFAHQNHFEELDLLAEKLADEARGHGGSLS
EWLQSRLMNQHGVRVVPTDDDAIDSQRRYDPASRVLRLSGSLEPGQQSFQLATQLALLEQ
TTLIESLLQSASFNDASTHALARIGLANYFASAVLLPYGLFLKAAETLRYDIDLLARRFG
VGFETICHRLSAMQRPGAPGVPFFFIRVDRAGNISKRQSATHFHFSKTGGTCPLWNVYEA
FAQPGRVLQQLARMPDGRTYLWVARTVSHGQRGFASPSKTFAIGLGCDIRHAPRLIYSKG
LDLTDQDVPTPIGMGCKVCERVACPQRAFPFIGRPLDVNENESRFTPYAVADA
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atgagcaagacattcatgggcgtgcgactgcgcaagctgcgcgccgaacgcggcttgacg
caggtggcgctcgcccaggcgctgggcctgtcgcccagctacctcaaccagctggagcag
aaccagcggccgctgaccgtggccgtgctgctcaggatcagccgcacgcttggcgtcgac
gtgcagcagttctcggaagacgaggaagcccggctcgtctcgagcatgcgcgacgcgctg
gccgacaaccccggcggagaagccgtcgccctgcccgaactgcgcgaagtggcctcgcag
atgcccgcggtggcgcgcgcgctgctcgcgctgcaccgccgccaccaggaggccatggag
cgcctggagatcatggccggcgaactcggcgacggccggggcgaactgacgaatgcgcgc
cccatgcctttcgaggcggtgcgcgacttcttcttcgcccaccagaaccatttcgaggaa
ctcgacctgctggcggaaaagctcgcggacgaagcgcgcggccacggcggctcgctgtcc
gaatggctgcagtcgcggctcatgaaccagcacggcgtgcgcgtggtgcccacggacgac
gacgccatcgacagccagcgccgctacgaccccgccagccgcgtgcttcgcctgtcgggc
agcctggagcccggccagcagtcgttccagctggcaacccagctggcgctgctggagcag
acgacgctgatcgaatcactgctgcagagcgccagcttcaacgacgcctccacgcacgcg
ctggcccgcatcggcctggcgaactacttcgccagcgccgtgctgctgccctacggcctt
ttcctgaaggccgcggaaaccctgcgctacgacatcgacctgctggcgcgccgcttcggc
gtcggcttcgagaccatctgccatcgcctgagcgccatgcagcggcccggggcgcccggc
gtgcccttcttcttcattcgcgtggaccgcgccggcaacatctccaagcggcagtcggcc
acgcacttccacttctcgaagaccggcggcacctgcccgctatggaacgtgtacgaggcc
tttgcgcagcccgggcgcgtgctgcagcaactcgcgcgcatgcccgacgggcgcacctac
ctgtgggtggcacgcaccgtgtcgcacgggcagcgcggcttcgcctcgcccagcaagacc
ttcgccatcggcctgggatgcgacatccgccatgcgccgcggctgatctattccaagggc
ctggacctgaccgaccaggacgtgcccacccccatcggcatgggctgcaaggtgtgcgag
cgcgtggcctgcccgcagcgggcgtttccgttcatcgggcggccgctggacgtgaacgag
aacgaaagccggttcacgccctacgcagtggcggatgcctga
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