Variovorax sp. PMC12: C4F17_06370
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Entry
C4F17_06370 CDS
T05380
Name
(GenBank) NADP-dependent isocitrate dehydrogenase
KO
K00031
isocitrate dehydrogenase [EC:
1.1.1.42
]
Organism
vam
Variovorax sp. PMC12
Pathway
vam00020
Citrate cycle (TCA cycle)
vam00480
Glutathione metabolism
vam00720
Other carbon fixation pathways
vam01100
Metabolic pathways
vam01110
Biosynthesis of secondary metabolites
vam01120
Microbial metabolism in diverse environments
vam01200
Carbon metabolism
vam01210
2-Oxocarboxylic acid metabolism
vam01230
Biosynthesis of amino acids
vam04146
Peroxisome
Module
vam_M00009
Citrate cycle (TCA cycle, Krebs cycle)
vam_M00010
Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate
Brite
KEGG Orthology (KO) [BR:
vam00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00020 Citrate cycle (TCA cycle)
C4F17_06370
09102 Energy metabolism
00720 Other carbon fixation pathways
C4F17_06370
09106 Metabolism of other amino acids
00480 Glutathione metabolism
C4F17_06370
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
C4F17_06370
Enzymes [BR:
vam01000
]
1. Oxidoreductases
1.1 Acting on the CH-OH group of donors
1.1.1 With NAD+ or NADP+ as acceptor
1.1.1.42 isocitrate dehydrogenase (NADP+)
C4F17_06370
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Motif
Pfam:
Iso_dh
Motif
Other DBs
NCBI-ProteinID:
AVQ80605
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Position
1:complement(1386311..1387570)
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AA seq
419 aa
AA seq
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MSSYQHIKVPTEGQKISVNADNSLNVPDQPIIPFIEGDGTGLDITPVMLKVVDAAVAKAY
GGKKKIHWMEVYAGEKSTKVYGPDVWLPEETLQAVREYVISIKGPLTTPVGGGIRSLNVA
LRQELDLYVCLRPIRYFEGVPSPVREPHKTNMVIFRENSEDIYAGIEFEAESDKARKLIK
FLQDEMGVKKIRFPNTSGIGVKPVSIEGTERLVRKALQYAIDNDKPSVTIVHKGNIMKFT
EGGFRDWAYNLAAKEFGAELIDGGPWMKFKNPKTGKDITVKDSIADAFLQQILLRPAEYS
VIATLNLNGDYVSDALAAQVGGIGIAPGANLSDTVAMFEATHGTAPKYAGKDYVNPGSEI
LSAEMMLRHMGWTEAADLIISSMEKSIASKKVTYDFARLMDGATQVSCSGFGQVMIDNM
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgtccagctatcagcacatcaaagtcccgaccgaaggccagaagatctcggtcaatgct
gacaactccctcaatgtgcctgaccaaccgatcatccccttcatcgaaggcgacgggacc
ggactggacatcacgccggtgatgctcaaggtagtggacgccgcggtggccaaggcctac
ggcggcaagaagaagatccactggatggaggtctacgccggcgagaagtcgaccaaggtc
tacggccccgacgtctggctgcccgaagaaacgctgcaggccgtgcgcgagtacgtcatc
tccatcaagggcccgctcaccacgccggtcggcggcggcatccgctcgctgaacgtcgcg
ctgcgccaggagctcgacctctatgtctgcctgcgccccatccgctatttcgagggcgtg
cccagcccggtgcgcgaaccgcacaagaccaacatggtgatcttccgcgagaactcggaa
gacatctatgcgggcatcgagttcgaagccgagagcgacaaggccaggaagctcatcaag
ttcctgcaggacgaaatgggcgtcaagaagatccgtttcccgaacacctcgggcatcggc
gtcaagcccgtgtcgatcgaaggcaccgaacgcctggtgcgcaaggcgttgcagtacgcc
atcgacaacgacaagcccagcgtgaccatcgtccacaagggcaacatcatgaagttcacc
gagggtggcttccgtgactgggcctacaacctcgccgccaaggagttcggcgctgaactg
atcgacggtggcccgtggatgaagttcaagaatccgaagacaggcaaggacatcaccgtc
aaggacagcattgccgacgcgttcctgcagcagatccttctgcgccccgcggagtacagc
gtgattgccacgctcaacctcaacggcgactacgtgtccgacgccctggctgcgcaggtc
ggcggtatcggcatcgccccgggcgcgaacctgagcgacaccgtcgcgatgttcgaggcc
acgcatggcacggcgcccaagtacgcgggcaaggactacgtcaaccccggctccgagatc
ctctcggccgaaatgatgctgcgccacatgggctggaccgaagccgccgacctgatcatc
agctcgatggaaaagtcgatcgccagcaagaaggtcacctacgacttcgcgcgactgatg
gacggcgccacgcaggtgagctgctccggtttcggccaggtcatgatcgacaacatgtaa
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