Variovorax sp. PMC12: C4F17_07130
Help
Entry
C4F17_07130 CDS
T05380
Name
(GenBank) DNA primase
KO
K17680
twinkle mtDNA helicase [EC:
5.6.2.3
]
Organism
vam
Variovorax sp. PMC12
Brite
KEGG Orthology (KO) [BR:
vam00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03029 Mitochondrial biogenesis [BR:
vam03029
]
C4F17_07130
Enzymes [BR:
vam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
C4F17_07130
Mitochondrial biogenesis [BR:
vam03029
]
Mitochondrial DNA transcription, translation, and replication factors
Mitochondrial DNA replication factors
Mitochondrial DNA maintenance factors
C4F17_07130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helic-prim_T7_N
Toprim_2
Zn_Ribbon_Prim
Toprim
Toprim_4
DnaB_C
Motif
Other DBs
NCBI-ProteinID:
AVQ80740
LinkDB
All DBs
Position
1:1538556..1540178
Genome browser
AA seq
540 aa
AA seq
DB search
MERDLEDSVCIQKGPCEKCGSSDGNALYSDGHSFCFVCSHRTPGDGEAPTTKQRKTRMSE
NLISGDVRALPKRDIREETCAKFGYMVGQFKGETVQIAPYRNKDGDLVAQKLRNADKEFS
TLGDFKEVALFGAHLWSKGKKLVVTEGEIDCMTVAQVQNLKWPVVSVPNGAQGAKKAIAR
NLDYLTAFEEVIFMFDMDEPGIEAAKECAALLPVGKAKIASLPLKDPNELHLAGRGDEIV
QAMWNAKDYRPDGLLSFDDVIERIKKPVEWGLPWWDERLHQLTYGRRYREIYTFGAGTGI
GKTDWFTQQIAFDMDTLKLQVGLIFLETPVDELGKRIAGKKMGLLFHIPGAGWSQAQLDE
GSEWLRGKGHLYDSFGQTDWDVVRGHIRYMATALGIKVFYLDHLTALADTADEKGSLEQI
MKELAGVVHELGLILHLVSHLTTPDQGPPHEEGGRVTIRQFKGSRAIGFWSNFMFGMERN
QQAEDPAVKQTTTFRVLKDRNTGRATGATLGLTYDRDVGRLLPADLAFPTSPFPAEPDPF
NT seq
1623 nt
NT seq
+upstream
nt +downstream
nt
atggaacgtgacctcgaagacagcgtgtgcatccagaaggggccatgcgagaaatgtggt
tcctccgatggcaacgccctctattcggacggccactccttctgcttcgtttgcagccac
cgcacccccggtgacggcgaagccccaacaaccaaacaacgaaagacccgcatgagtgaa
aacctcatctccggcgacgtgcgggcacttcccaagcgagacatccgggaagagacctgc
gcaaagttcggctacatggtcggacagtttaagggcgagacggtgcagatcgccccgtac
cgcaacaaggacggcgacctcgtagctcagaagctgcgcaacgccgacaaggagttcagc
accctcggggacttcaaggaggtagccctgttcggcgcccacctgtggagcaagggcaag
aagctcgtggtgaccgagggcgagattgactgcatgacggtcgcccaggtacagaacctg
aagtggcccgtggtgtccgtcccgaacggtgctcagggcgccaagaaggccatcgccaga
aacctcgactacctcaccgcgttcgaggaggtcatcttcatgttcgacatggacgagccc
ggcatcgaggccgcgaaggaatgcgccgcgctgcttcccgttggcaaagccaagatcgcc
tcgctacccctgaaggacccaaacgagcttcacctggctggccgaggggacgagattgtt
caggccatgtggaacgccaaggactaccggcctgatggtctgctgtcgttcgacgacgta
atcgagcggatcaagaagccggtggaatggggcctgccatggtgggacgagcgcctgcac
caactcacatatgggcgccgataccgtgagatttacaccttcggcgctggtactggcatc
ggcaaaaccgactggttcacgcagcagatcgccttcgacatggacaccctcaagctccaa
gtcggcctcatcttcctggaaacgcctgtagacgagctgggcaagcgaatcgcaggaaag
aagatgggactcttgttccacatcccgggtgccggatggtcgcaggcacagctcgatgaa
ggctctgaatggctgcgaggcaagggacacctctacgactccttcggtcaaaccgattgg
gatgtggttcgggggcatatccggtacatggcgaccgcccttggaatcaaggtcttctac
cttgatcacctcaccgcgctggccgatacggctgacgaaaaggggagcctcgaacagatc
atgaaggagcttgccggggttgtgcatgaactcggcctgatcctgcacttggtgtcccac
ctaacgacgcctgaccaaggccctccgcacgaggaaggtgggcgcgtgaccattcggcag
ttcaaggggtcacgagctatcggcttctggagcaacttcatgtttggcatggaacggaac
cagcaagcagaagaccccgcggtaaagcaaaccaccacgttccgggtcctcaaggaccgc
aacacgggtcgcgccactggcgcaacgctcgggctcacctacgaccgcgatgtgggccgt
ctcctccccgccgatctggctttccccacctcacccttcccggccgagccggaccccttc
tga
DBGET
integrated database retrieval system
