Variovorax sp. PMC12: C4F17_07380
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Entry
C4F17_07380 CDS
T05380
Symbol
hpnD
Name
(GenBank) squalene synthase HpnD
KO
K02291
15-cis-phytoene synthase [EC:
2.5.1.32
]
Organism
vam
Variovorax sp. PMC12
Pathway
vam00906
Carotenoid biosynthesis
vam01100
Metabolic pathways
vam01110
Biosynthesis of secondary metabolites
Brite
KEGG Orthology (KO) [BR:
vam00001
]
09100 Metabolism
09109 Metabolism of terpenoids and polyketides
00906 Carotenoid biosynthesis
C4F17_07380 (hpnD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
vam01006
]
C4F17_07380 (hpnD)
Enzymes [BR:
vam01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.32 15-cis-phytoene synthase
C4F17_07380 (hpnD)
Prenyltransferases [BR:
vam01006
]
Terpene biosynthesis
Squalene/phytoene synthase
C4F17_07380 (hpnD)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SQS_PSY
DUF6596
Motif
Other DBs
NCBI-ProteinID:
AVQ80785
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Position
1:1589592..1590431
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AA seq
279 aa
AA seq
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MNPEQYVQDKAAASGSSFYYAFLFLPKPRRAAITAFYAFCREVDDVVDEVSDPGVAATKL
AWWRTEVAQSFAGTPRHPVMQALMPHAAAYGIEARQLNEVIDGCQMDLDQTRYLDFQGLA
RYCHLVAGVVGEVAARIFGQTDPQTTAYAHKLGLALQLTNILRDVGEDALRGRIYLPVNE
LQKFDVKAHEILNRVHSERFVALMKFQAARAHAAYDEALALLPLADRRAQKPGLMMASIY
RTLLREIERDDFQVLNQRVSLTPVRKFWLAWKVQALGRI
NT seq
840 nt
NT seq
+upstream
nt +downstream
nt
atgaatcccgagcaatacgtgcaagacaaggccgccgcctcgggcagcagtttctattac
gccttcctgttcctccccaagccgcgccgcgccgcgatcacggctttctatgcgttctgc
cgcgaggtcgacgacgtggtcgacgaggtcagcgatcccggcgtggccgccaccaagctc
gcctggtggcgcaccgaggtggcccagtctttcgcgggtacgccccgccacccggtgatg
caagcgctgatgccgcatgccgcggcctacggcatcgaggcgcgccagctcaacgaggtg
atcgacggctgccagatggacctggaccagacccgctatctcgacttccagggactcgcg
cgctactgccacctcgtggccggcgtggtgggcgaagtcgcggcgcgcatcttcggccag
accgatccgcagaccaccgcctatgcccacaagctgggcctggcgctgcagctcaccaac
atcctgcgcgacgtgggcgaagacgccctgcgcgggcgcatctacctgccggtgaacgag
ctgcagaagttcgacgtgaaggcgcacgagatcctgaaccgcgtgcactcggaacgcttc
gtcgcgctgatgaagttccaggccgcgcgcgcccacgcggcctacgacgaagcgctcgcc
ctgctcccgctggccgaccgccgcgcgcagaaaccgggcctcatgatggccagcatctac
cgcaccctgctgcgcgagatcgaacgcgacgatttccaggtgctgaaccagcgcgtaagc
ctgacgccggtgcgcaagttctggctggcgtggaaagtccaggcgctgggcagaatatga
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