Variovorax sp. PMC12: C4F17_07745
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Entry
C4F17_07745 CDS
T05380
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
vam
Variovorax sp. PMC12
Pathway
vam03030
DNA replication
vam03430
Mismatch repair
vam03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vam00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
C4F17_07745
03430 Mismatch repair
C4F17_07745
03440 Homologous recombination
C4F17_07745
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vam03032
]
C4F17_07745
03400 DNA repair and recombination proteins [BR:
vam03400
]
C4F17_07745
Enzymes [BR:
vam01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
C4F17_07745
DNA replication proteins [BR:
vam03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
C4F17_07745
DNA repair and recombination proteins [BR:
vam03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
C4F17_07745
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
AVQ80849
UniProt:
A0A2P1V6T1
LinkDB
All DBs
Position
1:complement(1662365..1665883)
Genome browser
AA seq
1172 aa
AA seq
DB search
MFVHLRLHTEFSVVDGTNRIDEVIKAAAADKQPALAITDLNNLFGAVKFYKQGRGKGVKP
VIGAEIFIDGLGKEPGALTRIVLLVQNMEGYLNLSELLARAWTQNVARGQSQAACKLEWV
QELAGGLIALSGAQAGPLGQPLLQGQGERAAELALQLAGIFPHRFYIELQRAGRPEDEPH
VIAAVQLAARLRLPVVATHPVQFAAREDYEAHEARVCISEGEILGNPRRVRRFTEEQYFK
SSAEMQALFADVPSALANTVEIAKRCNLTLVLGKPQLPDFPTPFISDGVRMPIGEFFRQE
SFEGLEARLKHLYPDEARRDAERPRYVERLEFEINTILNMGFPGYFLIVGDFIKWAKENG
CPVGPGRGSGAGSLVAYALKITDLDPLEYKLLFERFLNPERVSMPDFDIDFCQGNRDRVI
DYVKDKYGRNAVSQIATFGTMAARAAIRDVGRVLDMSYMFCDGISKLIPNKPGMSVTLQY
PPEKKIEGDKNNYAIEMEPQLAERIEKEEEVRMLVELAQKLEGMTRNIGMHAGGVLIAPG
KLTDFCPLYQQPGSESAVSQYDKDDVEAIGLVKFDFLGLATLTILEIAREFIMKRHKGQE
NFAFENIPLNDAATYRLFSEGKTEAVFQFESRGMQGMLKDARPTRLEDLIALNALYRPGP
MDLIPSFVARKHGREEVEYPHPAVAEMLSETYGIMVYQEQVMQTAQILGGYSLGGADLLR
RAMGKKKLEEMAEHREKFRAGALATHGIVQDKADEIFDLMEKFAGYGFNKSHAAAYSLLA
YHTGWLKVHYTAEFFCANMTVEMDDTDKLKLLFEDAQKNFGITFEPPDVNRGNYRFEPVT
DRVIRYGLGAVKGTGQLAVEAVVRAREEGGPFKSLFDFCVRIDRQRINKRTVEALIKAGA
FDSIQQNRASLIASVDRAFEFASATAANASQADIFGDCEHGSATAEPDLVDATPWGVKER
LTFEKTAVGFYLSGHLFDEVSHEVRRFCKREIGDLLDSRDQQVIAGIVSDFRVINGQRGR
LAIFKLDDKSEAIDATADEATINANRNTLKDDELVIVSGRLQPARGGFEARFQVQQVWDL
ATARCRFGKFLRVAVNGKAPDIARLVKDFPPRTEQTEVGDLVQGLPVRLSMARGGAQVEL
QLGERARFFPTDAALASWTAQAEAGKAQIVYD
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atgtttgttcacctgcgcctgcacaccgagttttccgtcgtcgacggcaccaaccgaatc
gatgaagtcatcaaggccgcggctgccgacaagcagcccgcactggccatcaccgacctg
aacaacctgttcggcgcggtcaagttctacaagcaggggcggggcaagggcgtcaagccg
gtcatcggcgccgaaatcttcatcgacgggctgggcaaggagcccggcgcgctgacccgc
atcgtgctgctggtgcagaacatggagggttatctgaacctctccgagctgctggcgcgg
gcctggacgcagaacgtggcgcgcggccagtcgcaggcggcctgcaagctggaatgggtg
caggagctggcgggcgggctgatcgcgctgtcgggcgcgcaggccggaccgctcggccag
ccgctgctgcaggggcagggcgagcgcgccgccgaactggcgctgcaactggcggggatt
tttccgcaccgcttctacatcgagttgcaacgcgccggccgtcccgaagacgagccgcac
gtcattgccgcggtgcagctcgcggcgcggctgcgcctgccggtggtggccacgcacccg
gtgcagttcgcggcccgcgaagactacgaggcgcacgaggcgcgcgtgtgcatttccgaa
ggcgagattctcggcaacccgcgccgcgtgcgccgcttcaccgaagagcagtacttcaag
tcgagcgccgagatgcaggcgctctttgccgacgtgccgagcgcgctggccaacacggtc
gagatcgccaagcgctgcaacctgacgctggtgctgggcaagccgcagctgccggacttt
cccacgccgttcatcagcgacggcgtgcgcatgccgatcggcgagttcttccgccaggag
tcgttcgaggggctggaggcgcgcctgaagcacctctaccccgacgaggccaggcgcgat
gccgagcgcccgcgctacgtcgagcgcctcgagttcgagatcaacaccatcttgaacatg
gggttcccgggctacttcctgatcgtgggcgacttcatcaagtgggccaaggaaaacggc
tgcccggtgggcccgggccggggctcgggtgccggctcgctggtggcctatgcgctgaag
atcaccgacctcgacccgctcgaatacaagctgctgttcgaacgtttcctgaaccccgag
cgcgtctcgatgcccgacttcgacatcgacttctgccagggcaaccgcgaccgcgtgatc
gactacgtgaaggacaagtacggccgcaacgccgtgagccagatcgccaccttcggcacc
atggccgcgcgcgcggccatccgcgacgtgggccgcgtgctggacatgagctacatgttc
tgcgacggcatcagcaagctgatcccgaacaagcccggcatgtcggtcaccctgcagtac
ccgcccgagaagaagatcgagggcgacaagaacaactacgccatcgagatggagccgcag
ctcgcggagcgcatcgagaaggaagaagaagtgcgcatgctggtcgagctcgcccagaag
ctcgaaggcatgacgcgcaacatcggcatgcacgccgggggcgtgctcattgcgccgggc
aagctcaccgacttctgcccgctctaccagcagcccggcagcgagtctgccgtgagccag
tacgacaaggacgacgtcgaagccatcggcctcgtgaagttcgactttctgggcctcgcc
acgctcaccatcctggagattgcgcgcgagttcatcatgaagcgccacaagggccaggag
aacttcgcgttcgagaacatcccgctgaacgacgcggccacgtacaggctgttctccgaa
ggcaagacggaagcggtgttccagttcgaatcgcgcggcatgcagggcatgctgaaggac
gcgcgccccacgcggctggaagacctgatcgcgctgaacgcgctgtaccgcccgggcccg
atggacctgattcccagcttcgtggcgcgcaagcacggccgcgaagaagtggagtatccg
cacccggccgtggccgagatgctctccgagacctacgggatcatggtctaccaggagcag
gtgatgcagaccgcgcagatcctgggcggctactcgctcggcggcgccgacttgctgcgc
cgcgccatgggcaagaagaagctcgaggaaatggccgagcaccgcgagaagttccgcgcc
ggtgcgctcgccacgcacggcatcgtccaggacaaggccgacgaaatcttcgacttgatg
gagaagttcgcgggctacggcttcaacaagtcgcacgccgccgcctactcgctgctggcg
taccacacgggctggctgaaggtccactacacggccgagttcttctgcgccaacatgacc
gtggaaatggacgacacggacaagctcaagctgctgttcgaagacgcccagaagaacttc
ggcatcaccttcgagccgccggacgtgaaccgcggcaactaccgcttcgagcccgtgacc
gaccgcgtcatccgctacgggctgggtgccgtcaagggcacgggccagctcgcggtcgag
gccgtagtgcgggcgcgcgaagagggcggcccgttcaagagcctgttcgacttctgcgtg
cgcatcgaccgccagcgcatcaacaagcgcacggtggaagcgctcatcaaggccggcgcc
ttcgactccatccagcagaaccgcgcgtcgctgatcgcctcggtcgaccgcgccttcgag
ttcgccagcgcgaccgcggccaatgcctcgcaggccgacatcttcggcgactgcgagcac
ggctcggccaccgcggagcccgacctggtcgacgccacgccgtggggcgtgaaggaacgc
ctgacgttcgagaagacggccgtcggcttctacctgtcgggccacctgttcgacgaggtc
tcgcacgaggtgcggcgcttctgcaagcgcgagatcggcgacctgctcgacagccgcgac
cagcaggtcattgccggcatcgtgagcgacttccgcgtcatcaacggccagcgcggccgg
ctggcgatcttcaagctcgacgacaagtcggaagccatcgacgccaccgccgacgaggcg
accatcaacgccaaccgcaacacgctgaaggacgacgaactcgtcatcgtcagcggccgg
ctgcagccggcgcgcggcggcttcgaggcgcgcttccaggtgcagcaggtgtgggacctg
gccacggcgcgctgccgcttcggcaagttcctgcgcgtggcggtgaacggcaaggcgccc
gacatcgcacgcctggtcaaggactttccgccgcgcaccgagcagaccgaggtcggcgac
ctggtccagggcctgccggtgcggctgtcgatggcgcgcggcggtgcgcaggtcgagctg
cagctgggcgagcgcgccaggttcttcccgaccgacgcggcgctggccagctggaccgcg
caggcggaggccggcaaggcgcagatcgtgtacgactga
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