Variovorax sp. PMC12: C4F17_08470
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Entry
C4F17_08470 CDS
T05380
Name
(GenBank) phenylalanine--tRNA ligase subunit beta
KO
K01890
phenylalanyl-tRNA synthetase beta chain [EC:
6.1.1.20
]
Organism
vam
Variovorax sp. PMC12
Pathway
vam00970
Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:
vam00001
]
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
C4F17_08470
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
vam01007
]
C4F17_08470
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vam03016
]
C4F17_08470
Enzymes [BR:
vam01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.20 phenylalanine---tRNA ligase
C4F17_08470
Amino acid related enzymes [BR:
vam01007
]
Aminoacyl-tRNA synthetase
Class II (U)
C4F17_08470
Transfer RNA biogenesis [BR:
vam03016
]
Eukaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Other AARSs
C4F17_08470
Prokaryotic type
C4F17_08470
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_synthFbeta
B3_4
tRNA_bind
B5
FDX-ACB
Motif
Other DBs
NCBI-ProteinID:
AVQ80977
LinkDB
All DBs
Position
1:complement(1811650..1814091)
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AA seq
813 aa
AA seq
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MQFPESWLREFCNPPLDSAELAETLTMGGFEVEERRPVAPPFTRIVVGEIKEAEQHPNAD
RLRVCQVDVGQGALLNIVCGAPNARVGIKVPCALVGAELPPGEDGKPFLIKLGKLRGVES
QGMLCSARELHLSEDHGGLLELAADAPIGADVRDVLKLDDSLLTLKLTPNLAHGLSVYGV
ARELAALTGAPLKTPAIAPVAPAFSDVLPVKVEAPELCGRFSGRIVRGVNTKVATPAWMV
ERLARCGQRSVTPLVDISNYVMFEYGQPSHIFDLDKIHGGLTVRWGKAGEQLKLLNGTTI
TVDDKVGVIADDREVESLAGIMGGDATSVSDDTQNIYVEAAFWWPAAVQGRSRRFNFSTD
AGHRYERGVDPSRTVQIIERITQLIVEICGGQAGAMDDQKLHVPEAVPVTLRVARAARVI
GMPLTQAQCADALNRLGFAITEGEGTLTVTPPPHRFDLLIEEDLIEEVARLIGFNNLPTT
APLAPITARVRPEAQRGRFAVRRAVAALGYQETINFSFVEAHWEQDLAGNANPIKLLNPI
ASQMSVMRSSLLGSLLQVLKFNLDRKAPRVRVFELGRVYLRDDSVATTDSTVRGVHQPMR
VAGLAWGDADEARWDGKPERIDFYDVKGDVEALLAPLVPSFEAAEHPALHPGRSARVLVD
GKAIGFVGELHPRWRQKWDFAQAPVLFELDLDAVTARPVPVAQPVPKHQAVERDIAVVVA
EAVTHDALMQTIRAATAAQGLLRDATLFDIYRPQPLRDGAVAAPGALAQGEKSMAVRLSF
QSDSATLTDEQVEPAVRAIVEQLGAKLGGRLRG
NT seq
2442 nt
NT seq
+upstream
nt +downstream
nt
atgcaattcccggaatcctggctgcgcgagttctgcaatccgcccctcgacagcgccgaa
ctggccgaaacgctcaccatgggcggtttcgaggtcgaagagcgccgtccggtcgcgccg
cccttcacgcgcatcgtggtcggcgaaatcaaggaagccgagcagcacccgaatgccgat
cgcctgcgcgtgtgccaggtcgacgtggggcagggcgccttgctcaacatcgtgtgcggc
gcgcccaatgcgcgcgtcggcatcaaggtgccgtgcgctctcgtcggcgccgaactgccg
ccgggtgaagacggcaagcctttcctcatcaagctgggcaagctgcgcggcgtcgagagc
cagggcatgctgtgctcggcgcgagaactgcacctgagcgaagaccacggcggcctgctc
gagctcgctgccgacgcgcccatcggcgccgacgtgcgcgatgtgctcaagctcgacgat
tcgctgctcaccctcaagctcacgcccaacctggcgcacggcctgagcgtgtacggcgtg
gcacgcgaactcgccgcgctcaccggcgcgccgctcaagacgccggccatcgcgccggtg
gccccggcgttcagcgacgtgctgcccgtcaaggtcgaggcgcccgagctttgcggccgc
ttctcgggccgcatcgtgcgcggcgtgaacaccaaggtggccacgccggcatggatggtc
gagcgcctggcgcgctgcggccagcgcagcgtgacgccgctggtcgacatctcgaactac
gtgatgttcgagtacggccagcccagccacatcttcgacctcgacaagatccatggcggc
ctcaccgtgcgctggggcaaggcgggcgagcagctcaagctgctcaatggcacgaccatc
acggtggacgacaaggtcggcgtgattgccgacgaccgcgaggtcgagtcgctcgccggc
atcatgggcggcgacgccacctccgtttcggacgacacgcagaacatctacgtcgaggcc
gcgttctggtggcctgccgccgtgcagggccgctcgcgccgcttcaacttctcgaccgac
gccggccatcgctacgagcgcggcgtcgatccgagccgcaccgtgcagatcatcgagcgc
atcacgcagttgatcgtcgaaatctgcggcggccaggccggcgcgatggacgaccagaaa
ctgcacgtgcccgaggccgtccccgtcacgcttcgcgtggcgcgcgccgcgcgcgtgatc
ggcatgccgctgacgcaggcgcaatgcgccgacgcgctgaaccggctgggctttgccatc
accgaaggcgaaggcacgctgaccgtgaccccgccgccgcatcgcttcgacctgctcatc
gaagaagacctgatcgaagaagtggcgcgcctgatcggcttcaacaacctgccgaccacc
gcgccgctcgcgccgatcacggcccgtgtgcggcccgaggcgcagcgtggccgctttgcg
gtgcgccgcgccgttgcggcgctgggctatcaggaaacgatcaacttcagtttcgtcgag
gcgcattgggagcaggaccttgccggcaatgccaatccgatcaagctgctgaaccccatc
gccagccagatgagcgtgatgcgttcgtcgctgctgggttcgctgctgcaggtgctcaag
ttcaacctcgatcgcaaggcgccgcgcgtgcgtgtgttcgagctgggccgtgtctacctg
cgcgacgacagtgtcgccaccaccgacagcaccgtgcgcggcgttcatcagccgatgcgc
gtggcgggccttgcgtggggcgatgccgacgaagcgcgttgggacggcaagcccgagcgc
atcgacttctacgacgtcaagggtgacgtggaagcactgctcgcgccgctggtgccgagc
ttcgaggcagccgaacatcccgcgctgcacccgggccgttcggcacgcgtgctggtcgac
ggcaaggccatcggcttcgtcggtgaactgcatccgcgctggcgccagaagtgggacttt
gcccaggcgccggtgctgttcgaactcgatctcgacgcagtgacggcgcgccccgtgccc
gtggcgcagccggtgcccaagcaccaggccgtggagcgcgacatcgccgtcgtcgtggcc
gaagccgtcacgcacgacgcgctgatgcagaccatccgcgcggccacggccgcgcagggc
ctgctgcgcgatgcgacgctgttcgacatctaccgtccccagccgctgcgcgatggcgcc
gtggctgcgccgggcgcgctggcacagggcgagaagagcatggcggtgcgcctgagcttc
cagagcgacagcgccacgctgacggacgagcaggtcgagcctgcggtgcgtgccatcgtc
gaacaattgggcgccaagctcggcggccgcttgagggggtga
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