Variovorax sp. PMC12: C4F17_08900
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Entry
C4F17_08900 CDS
T05380
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
vam
Variovorax sp. PMC12
Pathway
vam03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vam00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C4F17_08900 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vam03019
]
C4F17_08900 (pnp)
03016 Transfer RNA biogenesis [BR:
vam03016
]
C4F17_08900 (pnp)
Enzymes [BR:
vam01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
C4F17_08900 (pnp)
Messenger RNA biogenesis [BR:
vam03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
C4F17_08900 (pnp)
Transfer RNA biogenesis [BR:
vam03016
]
Prokaryotic type
tRNA degradation factors
C4F17_08900 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
S1_RRP5
KH_2
OB_RRP5_4th
KH_SLS1_2
Methyltransf_3
DUF5813
KH-I_KHDC4-BBP
aRib
Motif
Other DBs
NCBI-ProteinID:
AVQ81054
LinkDB
All DBs
Position
1:complement(1899197..1901539)
Genome browser
AA seq
780 aa
AA seq
DB search
MSLFNKVTKSFQWGDKTVVMETGEIARQASGAVLVDIDGTVILATVVASKSAKPGQDFFP
LTVDYIEKTYAAGKIPGSFFKREAKPSEHETLTSRLIDRPIRPLFPEGFLNEVHVVIHTI
SLNPEVDADIAAMIGVSAALSISGVPFNGPIGAARVGYINGQYVLNPGQTARKDSQMDLV
VAGTQAAVLMVESEALQLSEEIMLGGVVFGHEQANVAINAIHELVRDAGKPVWDWKAPAE
DEAFVAKVKGLAEEKLRAVYQIRSKQARTQALREANASVLEALKAEGTEFDSGKVSDLLF
AIESKIVRSQILSGEPRIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQALVITTLGT
ERDAQRIDALAGEYEDRFLFHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALVAVLPNK
EEFPYTVRVVSEITESNGSSSMASVCGGCLSMMDAGVPMKAHVAGIAMGLIKEDNRFAVL
TDILGDEDHLGDMDFKVAGTTNGITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQ
EAMGEAKAEVSSFAPRLTTLKINPEKIRDVIGKGGSVIRGLQEETGTTINIDEDGTITIA
STDPEKAELAKKRIEQITAEVEIGKVYEGPVTKILDFGALINLLPGKDGLLHISQIAHER
VEKVTDYLSEGQIVKVKVLETDEKGRVKLSMKALTERPAGMEFSERPPREDRGDRGDRGD
RGGERRERSDRGDRGDRGDRGGDRGERAPRFNDQQQQPRNEQPQAAAGEQQQQAPREPQE
NT seq
2343 nt
NT seq
+upstream
nt +downstream
nt
atgagcctcttcaacaaagtcaccaagtcgttccaatggggcgacaagaccgtcgtcatg
gaaacgggtgaaatcgcccgccaggccagcggcgccgtgctcgtcgacatcgacggcacc
gtcatcctcgcgaccgtggtcgcttccaagtcggccaagcccggccaggacttcttcccg
ctgaccgtcgactacatcgagaagacctacgccgccggcaagatccccggcagcttcttc
aagcgcgaagccaagcccagcgaacatgaaacgctgaccagccgcctgatcgaccgcccg
atccgcccgctgttccccgaaggcttcctgaacgaagtgcatgtggtcatccacacgatc
tcgctcaaccccgaagtcgatgccgacatcgccgccatgatcggcgtgagcgccgcgctg
tcgatctccggcgtgccgttcaacggcccgatcggtgcggcccgcgttggctacatcaac
ggccagtacgtgctgaatccgggccagaccgcccgcaaggattcgcagatggacctcgtc
gtcgccggcacgcaagctgccgtgctgatggtcgagtccgaagccctgcagctcagcgaa
gaaatcatgctgggcggtgtggtgttcggccacgagcaggccaacgtcgccatcaacgcg
atccatgaactcgtgcgcgacgccggcaagccggtgtgggactggaaggcccccgccgaa
gacgaagccttcgtcgccaaggtcaagggcctggccgaagaaaagctgcgcgccgtctat
cagatccgcagcaagcaggcccgtacgcaagccctgcgcgaagccaacgccagcgtgctc
gaggcactgaaggccgaaggcaccgaattcgactccggcaaggtcagcgacctgctgttc
gccatcgagtcgaagatcgtgcgcagccagatcctgtcgggcgagccccgcatcgacggc
cgcgacacgcgcaccgtgcgccccatcgagatccgcaactcggtgctgccccgcacccac
ggctcggccctgttcacgcgcggcgaaacccaggcgctggtcatcaccacgctcggcacc
gaacgcgacgcgcagcgcatcgacgcgctggccggcgaatacgaagaccgcttcctgttc
cactacaacatgcctcccttcgccaccggtgaagtgggccgtatgggctcgaccaagcgc
cgcgaaatcggccacggccgcctggccaagcgcgcgctcgtcgccgtgttgccgaacaag
gaagagtttccctacacggtgcgtgtggtgtcggaaatcaccgagtcgaacggctcgtcg
tcgatggcatcggtgtgcggcggctgcctctcgatgatggacgccggcgtgcccatgaag
gcgcacgtggccggcatcgccatgggcctgatcaaggaagacaaccgcttcgcggtgctg
accgacatcctgggcgacgaagatcacctgggcgacatggacttcaaggttgccggtacc
accaacggcatcaccgcgctgcagatggacatcaagatccagggcatcaccaaggaaatc
atgcaggtcgccctggcacaggccaaggaagcgcgcatgcacatcctgggcaagatgcag
gaagccatgggcgaggccaaggccgaagtctccagcttcgcaccgcgcctgaccacgctg
aagatcaaccccgagaagatccgcgacgtgatcggcaagggcggttcggtcatccgtggc
ctgcaggaagaaaccggcacgacgatcaacatcgacgaagacggcaccatcaccatcgcc
tcgaccgatccggaaaaggcagaactggccaagaagcgcatcgagcagatcacggcggaa
gtcgaaatcggcaaggtctacgaaggcccggtcaccaagatcctggacttcggcgcgctc
atcaacctgctgcccggcaaggacggcctgctgcacatcagccagatcgcgcacgaacgc
gtcgagaaggtgaccgactacctgagcgaaggccagatcgtgaaggtcaaggttctcgag
accgacgaaaagggccgcgtcaagctgtccatgaaggccctgaccgagcgtccggccggc
atggaattcagcgagcgcccgccgcgtgaagaccgtggcgatcgcggtgaccgtggtgac
cgtggtggtgagcgccgcgagcgttcggaccgtggtgatcgcggcgaccgtggcgaccgc
ggtggtgatcgtggcgagcgcgcaccgcgcttcaacgaccagcagcagcaaccgcgcaac
gagcagccgcaggctgcggccggcgagcagcaacagcaagccccgcgcgagcctcaggag
taa
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