Variovorax sp. PMC12: C4F17_09235
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Entry
C4F17_09235 CDS
T05380
Name
(GenBank) TonB-dependent siderophore receptor
KO
K16088
outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acid
Organism
vam
Variovorax sp. PMC12
Brite
KEGG Orthology (KO) [BR:
vam00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
vam02000
]
C4F17_09235
Transporters [BR:
vam02000
]
Other transporters
Pores ion channels [TC:
1
]
C4F17_09235
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TonB_dep_Rec_b-barrel
Plug
STN
Motif
Other DBs
NCBI-ProteinID:
AVQ81116
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Position
1:1984506..1987052
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AA seq
848 aa
AA seq
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MSDVTLSPISSARPKAGPPLPTRKATLALAALFACGSASFAQAPTASPGAPAATDGALAW
KLPADELGIVLARIARQSGRTISAAPALVAGRRAPAVQGRLTVAQAAQQALAGSGLALAQ
TPSGTLTVVASESSAALPSTPEAGSTLAEVRVTAQADRTGTTEGTGAYTARGPSSSATGL
GLGLKDTPQSISVITQQRLEDQNLTSIGQVLARTPGLSTSTLGTERNSASARGYPITNYQ
LDGVSTHSEFLGLDALPTQSIADMALYDRIEVMRGASGLTTGAGDPSGIINMVRKKPTAA
FQGVAEASVGSWGDRRGMLDISTPLNESGSVRGRMVAVHQEGNSYIDYYRKKKDVFYGVV
EADLTSTLKLTAGIDHQENRSRGSLSYLGYPLFNSSGEQVDFPVSFNGASRDNRFNTNST
SGFVTLEQSLANDWKLKLSANYLRSKQREDSVYLAVNSSLFDKFTGDGLNLNAERRDYNL
RNKTVDLKLTGPFTLFGRQHEAVIGADYTDFRSLTNGSFDISGLRNAPVNIYSWNNTGTP
VFGDRYVTFDSTRRQKSIYGAGRLQLSDQFKLVVGGKLLDYDSDYITDTTDGYHTNSPSS
ERRVFTPYAGLLYDLNENHTLYTSFATIYNPQSSVDRNGALLDPQKGDTYEAGIKSSFLD
GRVTSSAAVYQIKQDNVAEADSGYFVPGTTTTASRAIKGATTRGIDLELNGTLARGWNVA
ASYNFSTSKDPNGQRINTTFPRQMARLWTTYRMPGDWRRLTLGGGVDWSSGFYYTGEAWQ
IERTVTARQGAYAVASLMARYEVNDQLSLTLNVQNLFDRKYISSVSGWWYSGTYGAPRNV
QLTARYKF
NT seq
2547 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacgtgacgctctcccctatttcatcggcccgcccgaaggccggcccacccctg
ccgacgcgcaaggccacactggcgctggccgcactgttcgcatgcggcagcgcatcgttc
gcgcaagcgccaaccgcatccccgggcgctcccgctgcaaccgacggcgccctggcatgg
aagctgcccgccgatgagctgggcatcgtgctggcacgcatcgcccgccagagcggccgc
accatcagtgcggcacccgcgctcgtggccggacgccgggcgcctgcggtgcaagggcgc
ctgaccgtggcgcaagcggcgcagcaggcgctggccggcagcggactcgcgttggcgcag
acaccgagcggcacgctgacggtggtcgcgtccgaaagcagcgcggcgctgccgtccacg
cctgaagcgggctccacgctggccgaggtgcgcgtgacggcgcaggccgaccgcactggc
accaccgaaggcactggtgcctacaccgccagggggccgagcagttcggccaccggcctt
ggactgggcctgaaggacacgccacagtcgatcagcgtgatcacgcagcagcgcctggaa
gaccagaacctcaccagcatcggccaggtgctggcgcgcacgccgggcctctcgacctcg
acgctgggcacggagcgcaacagcgccagcgcgcggggctacccgatcaccaactaccag
ctcgacggggtcagcacgcacagcgaattcctgggcctggatgcgctgcccacgcagagc
atcgcggacatggcgctgtacgaccgcatcgaggtgatgcgcggcgcctcgggcctgacc
acgggggcgggtgatccgtccggcatcatcaacatggtgcgcaagaagcccacggccgcg
ttccagggcgtggcggaggccagcgtcggctcgtggggcgaccggcgcggcatgctggac
atctcgaccccgctgaacgaatcgggcagcgtgcgcggccggatggtggcggtgcaccag
gaaggcaacagctacatcgactactaccgcaagaagaaagatgtgttctacggcgtggtg
gaagccgacctgacctccacgctgaagctcaccgcgggcatcgaccatcaggaaaaccgg
tcgcgcggatcgctgtcttacctgggctatccgctgttcaacagcagcggcgagcaggtc
gactttccggtgtccttcaacggcgcgagccgcgacaaccgcttcaacaccaattcgacc
agcggcttcgtgacgctggagcagtcgctcgccaacgactggaagctcaagctctcggcc
aactacctgcgctcgaagcagcgcgaagactcggtctacctggcggtcaacagcagcctt
ttcgacaagttcaccggcgacggactgaacctgaacgccgagcgccgcgactacaacctg
cgcaacaagacggtggacctgaagctgacgggcccgttcaccctgttcggccgccagcac
gaagccgtgatcggcgccgactacaccgacttccgcagcctcaccaacggcagcttcgac
atctcggggctgcgcaatgcgccagtcaacatctacagctggaacaacacgggcacgccg
gtgttcggggaccgttacgtcaccttcgacagcacgcggcggcaaaagagcatctacggc
gcgggccgcctccagctgagcgaccagttcaagctggtggtgggcggcaagctgcttgac
tacgacagcgactacatcaccgacaccaccgacggctaccacacgaactcgccttcgtcc
gagcggcgcgtgttcacgccctatgccggtctgctgtacgacctgaacgagaaccacacg
ctctacacaagctttgccacgatctacaacccgcaaagctcggtcgaccgcaacggcgcg
ctgctcgatccgcaaaagggcgacacgtacgaggccggcatcaagagcagcttcctcgac
ggccgggtgacgagcagcgccgccgtctaccagatcaagcaggacaacgtcgcggaggcg
gactcgggttacttcgttccgggcaccacgaccacggcctcgcgcgccatcaagggcgcg
acgacgcggggcatcgacctggagctcaacggcacgctggcgcgcggctggaacgtggct
gcgtcctacaacttcagcacctcgaaggaccccaacggccagcgcatcaacaccaccttt
ccgcgccagatggctcgcctgtggaccacctatcgcatgcccggcgactggcggcggctc
acgctgggcggcggcgtggactggagcagcggcttctactacacgggagaggcctggcag
atcgaacgcacggtcaccgcacgccagggcgcctatgccgtggccagcctgatggctcgg
tacgaagtcaacgatcagctctctctcacgctcaacgtgcagaacttgttcgaccgcaag
tacatctcgtcggtttcgggctggtggtactcgggcacgtacggcgcgccgcgcaacgtg
cagctgacggcgcgctacaagttctga
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