Variovorax sp. PMC12: C4F17_09310
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Entry
C4F17_09310 CDS
T05380
Name
(GenBank) microcin ABC transporter ATP-binding protein
KO
K02031
peptide/nickel transport system ATP-binding protein
K02032
peptide/nickel transport system ATP-binding protein
Organism
vam
Variovorax sp. PMC12
Pathway
vam02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
vam00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
C4F17_09310
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
vam02000
]
C4F17_09310
Transporters [BR:
vam02000
]
ABC transporters, prokaryotic type
Peptide and nickel transporters
Peptides/nickel transporter
C4F17_09310
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
oligo_HPY
AAA_21
SMC_N
AAA_16
AAA_29
NACHT
AAA_22
TniB
Sigma54_activat
nSTAND1
Mg_chelatase
DUF87
RsgA_GTPase
nSTAND3
ATP-synt_ab
AAA_33
FtsK_SpoIIIE
AAA_25
AAA_7
CbiA
PRK
Motif
Other DBs
NCBI-ProteinID:
AVQ81126
UniProt:
A0A2P1V7H4
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All DBs
Position
1:complement(2002700..2004337)
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AA seq
545 aa
AA seq
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MTDSNRSAAILEVRGLRVALPSDADRPHAIEHLDLRIEAGRTLCIVGESGSGKSVLATTV
MGLLAKGLVLAGGDVILSGEKLVDNGRFTSDKRLRQLRGTGMGMVFQEPMTALNPVLTCG
EQVDELLRTHTAWGAAERKAHILSIFERVRLPDPARIHGSYPHQLSGGQRQRIVIAMAII
LKPRLLICDEPTTALDVTTQAEILKLIAELQVEQGSAVLFITHDMGVVAEIADDVMVMHR
GALVEQGPCEQVLRNPREAYTRMLLDAVPGMTPPPARELPGGKPLLAGQGVGKIYTRRDW
LGRAKHNTALQDASVAVHRGETVGVVGESGSGKSTFARCMIRLISPSAGSILWGDAEVRD
LPEGRLRPLRSRVQVVFQDPNRSLNPRRTVGSSMVEGAMNFGLSKLHARQTAEELMDRIQ
LPRTALDRYPHQFSGGQRQRLAIARAIACQPQVLVADEAVSALDVSVQAQILNLLREIQR
DLGLGILFITHDLRVAAQLCDRVIVMSQGRIVEQGPTGQVFGAPANDYTRRLLAAAPRAE
LASAR
NT seq
1638 nt
NT seq
+upstream
nt +downstream
nt
atgactgattccaatcgaagcgccgccatcctcgaagtgcgcggcctgcgggtcgcgctg
ccctccgatgccgaccggccgcatgccatcgagcatctcgacctgcgcatcgaggcgggg
cgcacgctgtgcatcgtaggcgaatccggctcgggcaagtcggtgctggccaccaccgtg
atggggctgctggccaagggcctggtgctcgcgggcggcgacgtgattctttcgggcgag
aagctggtcgacaatggccgcttcacttccgacaagcggctgcgccagttgcgcggcacc
ggcatgggcatggtgttccaggagccgatgaccgcgctgaacccggtgctcacctgcggc
gagcaggtcgacgaactgctgcgcacgcacaccgcgtggggcgcggccgagcgcaaggcg
cacatcctctcgatcttcgagcgcgtgcggctgcccgacccggcgcgcatccacggcagc
tacccgcaccagctctcgggcgggcagcgccagcgcatcgtgatcgcgatggccatcatc
ctgaagccgcgcctgctgatctgcgacgagccgaccaccgcgctggacgtgaccacgcag
gccgagatcctcaagctcatcgccgagctgcaggtcgagcagggcagcgccgtgctcttc
atcacgcacgacatgggcgtggtcgccgagatcgccgacgacgtgatggtgatgcaccgc
ggcgcgctggtggagcagggcccgtgcgaacaggtgctgcgcaacccgcgcgaggcctac
acccgcatgctgctggacgcggtgcccggcatgacgccgccgcccgcgcgcgaactccca
ggcggcaagccgctgctggcggggcagggcgtcggcaagatctacacgcggcgcgactgg
ctcggccgcgcgaagcacaacaccgcgctgcaggacgccagcgtggccgtgcatcgcggc
gagacggtgggcgtggtgggcgaatcgggctcgggaaagtcgactttcgcgcgctgcatg
atccggctgatttcgcccagcgcgggcagcattctctggggcgacgccgaagtgcgcgac
ctgcccgaaggccggctgcggccgctgcgctcgcgggtgcaggtggtgttccaggacccg
aaccgctcgctcaacccgcgccgcaccgtgggctcgtcgatggtcgaaggcgccatgaac
ttcggcctgagcaagctgcatgcgcgccagaccgccgaggagctgatggaccgtatccag
ctgccgcgcaccgcgctcgaccgctatccgcaccagttctcaggcggccagcgccagcgc
ctggccattgcgcgcgccattgcctgccagccgcaggtgctggtggccgacgaggccgtg
tcggcgctcgacgtgtcggtgcaggcgcagatcctgaacctgctgcgcgagatccagcgc
gacctggggctgggcattctgttcatcacgcacgacctgcgcgtggcggcgcaactgtgc
gaccgcgtcatcgtgatgagccagggccgcatcgtggagcagggccccacgggtcaggtg
ttcggcgcgccggccaacgactacacgcggcggctgctggcggccgcgccgcgtgcggaa
ctcgcgagcgcacggtga
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