Variovorax sp. PMC12: C4F17_09980
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Entry
C4F17_09980 CDS
T05380
Name
(GenBank) phosphogluconate dehydratase
KO
K01690
phosphogluconate dehydratase [EC:
4.2.1.12
]
Organism
vam
Variovorax sp. PMC12
Pathway
vam00030
Pentose phosphate pathway
vam01100
Metabolic pathways
vam01120
Microbial metabolism in diverse environments
vam01200
Carbon metabolism
Module
vam_M00008
Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate
Brite
KEGG Orthology (KO) [BR:
vam00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00030 Pentose phosphate pathway
C4F17_09980
Enzymes [BR:
vam01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.12 phosphogluconate dehydratase
C4F17_09980
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GFIT
Motif
Pfam:
ILVD_EDD_N
ILV_EDD_C
Motif
Other DBs
NCBI-ProteinID:
AVQ81248
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Position
1:complement(2129848..2131677)
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AA seq
609 aa
AA seq
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MSSSTHPTVRDVTDRIRERSHGPRSAYLSQLAEIRNRDRGSDRMGCANVAHAVAGIPAND
KFRVVAERAPNIGIVTAYNDMLSAHAPYQGYPDIIKQEARRLGATAQVAGGVPAMCDGVT
QGTPGMELSLFSRDVIAMSTAIALTHDMFDAALMLGVCDKIVPGLLIGALHFGHLPTVFV
PAGPMPSGLSNGAKSKVREQAAQGLVGRQGLLDAEMAAYHTQGTCTFYGTANSNQMLLEA
MGLHVPGTAFIQPGDAMRETLTREAVRTVLGKAGEAAFQCPPIGEMVDERCIVNAMVALL
ATGGSTNHLIHWVAVARAAGIVIDWDDFSRLSDIIPLLTRVYPNGSADVNEFQAAGGPGF
VIGELVDAGLMHGDVLTVRAGGIREFANVPELDGEQLRWTSAAPSKNDAVARPVSSPFSA
TGGLKLLSGNLGRSVIKVSSVPDDRHVIEAPARVFDSQAALHKAFTAGELERDVVCVVRW
QGPQANGMPELHKLTPPLSVLQGKGFRVALVTDGRMSGASGKIPAAIHVSPEAAAGGPLA
KVRDGDVIRLDSVAGTLAVLLPEDEWAAREIATLPEAQRNADGRGLGRELFAGMRRNALT
AEEGACSWL
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcagcacacaccccaccgtccgcgacgtcaccgatcgcatccgcgagcgcagc
catgggccgcgcagcgcctacctctcccagctggccgagatccgcaaccgagaccgcggc
tccgaccgcatgggctgcgccaacgtggcgcacgccgtggccggcattccggccaacgac
aaattccgcgtggtggccgagcgcgcacccaacatcggcatcgtcaccgcctacaacgac
atgctctcggcccacgcgccgtaccagggctaccccgacatcatcaagcaggaggcccgc
cgcctcggtgccaccgcccaggtggccggcggcgtgccggccatgtgcgacggcgtcacg
cagggcacgcccggcatggagctgagcctgttcagccgcgacgtgatcgccatgagcacc
gccatcgcgctcacgcacgacatgttcgacgccgcgctgatgctcggcgtgtgcgacaag
atcgtgccgggcctcctgatcggcgccttgcacttcggccacctgccgaccgtgttcgtg
cccgccggccccatgccctcgggcctgtcgaacggcgccaagtcgaaggtgcgtgagcag
gcggcgcaggggctcgtcggccgccaggggctgctcgacgccgaaatggcggcctatcac
acgcagggcacctgcaccttctacggcaccgccaacagcaaccagatgctgctcgaggcc
atgggcctgcacgtgcccggcacggccttcatccagcccggcgacgcgatgcgcgaaacg
ctcacgcgcgaggcggtgcgcacggtgctgggcaaggcaggcgaggctgccttccagtgc
ccgccgatcggcgagatggtcgacgagcgttgcatcgtcaacgccatggtcgcgctgctg
gccacgggcggctccaccaaccacctgatccactgggtggccgtggcgcgcgcggccggc
attgtgatcgactgggacgacttctccaggctctccgacatcattccgctgctgacccgc
gtgtaccccaacggcagcgccgacgtgaacgaattccaggcggccggcggccccggcttt
gtgatcggcgaactggtggacgccggcctgatgcacggcgacgtgctcaccgtgcgcgcc
ggcggcatccgcgaattcgccaacgtccccgagcttgacggcgaacagctgcgctggacc
tccgccgcaccatcgaagaacgacgccgtcgcgcggccggtgagcagccctttcagcgcc
accggcggcctgaagctgctgagcggcaacctgggccgcagcgtcatcaaggtgtcgtcg
gtgccggacgaccgccatgtcatcgaggcacccgcgcgggtgttcgactcgcaggcggcg
ctgcacaaggccttcaccgccggcgagctggagcgcgacgtggtctgcgtggtgcgctgg
cagggcccgcaggccaacggcatgcccgagctgcacaagctcacgccgccgctgtcggtg
ctgcagggcaagggattccgcgtggcgctggtcaccgacggccgcatgagcggcgcgtcg
ggcaagattccggccgccatccacgtgtcacccgaagcggccgccggcggcccgctcgcc
aaggtgcgcgacggcgacgtgatccggctggactcggtggcgggtacgctcgccgtgttg
ctgcccgaagacgaatgggccgcgcgcgaaatcgcgacgctgcccgaagcacagcgcaac
gccgacggacgcggcctaggtcgcgagctgttcgccggcatgcgcagaaacgcattgact
gcagaagaaggagcctgctcatggctgtga
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