Variovorax sp. PMC12: C4F17_10070
Help
Entry
C4F17_10070 CDS
T05380
Name
(GenBank) adenosine deaminase
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
vam
Variovorax sp. PMC12
Pathway
vam03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
vam00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
C4F17_10070
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
vam03000
]
C4F17_10070
03400 DNA repair and recombination proteins [BR:
vam03400
]
C4F17_10070
Enzymes [BR:
vam01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
C4F17_10070
Transcription factors [BR:
vam03000
]
Prokaryotic type
Helix-turn-helix
AraC family
C4F17_10070
DNA repair and recombination proteins [BR:
vam03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
C4F17_10070
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ada_Zn_binding
AlkA_N
HTH_18
HTH_AraC
HhH-GPD
RecR_HhH
HTH_23
Motif
Other DBs
NCBI-ProteinID:
AVQ81266
LinkDB
All DBs
Position
1:2148465..2150057
Genome browser
AA seq
530 aa
AA seq
DB search
MPSTHAPTEALESDACYLAMKTHDARFDGSFFTAVTSTGIYCRPVCRVKLPRRENCRFFR
HAAQAEAAGFRPCLRCRPELAPRAASWSTEDASRILALQAARLIDEPDAWSEDGPGAAQI
AARLGVSDRHLRRIFEAQFGVSPLQYLQTRRLLAAKQLIADTRLPMTQVALASGFASVRR
FNAAFVEHYGLNPSALRRAGGAAVENGAGRAIEVRLGFRPPYDDNAMLGFFARRALRGIE
VVATADGKEPAKGSTPAYVKLARTLRIQQGGQAHAGWLQLRFDLDREQALLSVSDSLAAV
LPIVISRARALFDLDAEPMAINAALHAAFPHGDGLRVPGAVDGFELAVRAVLGQQITVAA
ARTLGSRLVAAFGETIATPIEGLDRLFPTPAAIAQASGDALGQLGIVRQRQAALQAIARE
VAHGRLALHAGADVPSTIAALQELPGIGAWTAQYIAMRALRWPDAFPAGDVALQKALGVT
TARAASEASQAWRPWRSYAVLRAWHAPPAPSTANAAAAASPLITTAGLTA
NT seq
1593 nt
NT seq
+upstream
nt +downstream
nt
atgccttccacccacgcccccaccgaagcgctcgagagcgacgcctgctacctggcgatg
aagacgcacgacgcgcgcttcgacgggtcgttcttcaccgccgtgacctccacaggcatc
tattgccggccggtctgccgcgtcaagctgccgcggcgcgagaactgccggttcttccgc
cacgcggcgcaggcggaggccgcgggcttccgtccctgcctgcgatgccggccggagctg
gcgccgcgcgcggccagctggtcgaccgaggacgcctcccgcatcctcgcgctgcaggcc
gcgcggctgatcgacgagcccgatgcatggtccgaggacggccccggcgcggcgcagatc
gcggcccgcctgggcgtgagcgaccgccatctgcgccgcatcttcgaggcgcagttcggg
gtgtcgccgctgcagtacctgcagacgcgccgcctgctggccgccaagcaattgatcgcc
gacacccgcctgcccatgacgcaggtcgcgctggccagcggctttgcgagcgtgcggcgc
ttcaatgccgcattcgtggagcactacggcctcaacccgagcgcactgcgccgagccggc
ggcgcggccgtggagaacggcgcgggccgggccatcgaggtgcggctgggtttcaggccg
ccctacgacgacaacgccatgctcggcttcttcgcgcgccgtgcgctgcgcggcatcgaa
gtggtggccacggccgacggcaaggagccggccaagggcagcacgcccgcctatgtgaag
ctggcgcgcaccctgcgcatccagcagggtgggcaggcgcatgccggctggctgcaactg
cgcttcgacctcgatcgcgaacaggcgctgctgtcggtcagcgactcgctggccgccgtg
ctgcctatcgtcatcagccgcgcccgcgcgctgttcgacctcgacgcagagccgatggcc
atcaacgccgcgctgcatgcggccttcccgcacggcgacggcctgcgcgtgcccggcgcg
gtcgacggcttcgagctggcggtgcgcgcggtgctgggccagcagatcacggtggccgcg
gcgcgcacgctgggctcgcggctggtggcggcattcggcgaaaccatcgcgacgcccatc
gaaggactcgaccggctgtttcccacgccggccgcaatcgcccaggcgagcggcgacgcg
ctggggcagctgggcatcgtgcgacagcggcaggccgccctgcaggccatcgcccgcgag
gtcgcgcacggcaggctggcgctgcatgcgggggccgacgtgccctcgaccatcgcggcg
ctgcaggagttgccgggcatcggcgcctggaccgcgcagtacatcgcgatgcgcgcactg
cgctggcccgacgccttcccggccggcgacgtcgcgctgcagaaggcgctgggcgtgacc
accgcgcgcgccgccagcgaggcctcgcaagcctggcgcccctggcgcagctatgcggtg
ctccgcgcatggcacgcgcctccggcgccctccaccgccaacgcggccgcggctgcgtct
cccctcatcaccacggcaggcctcaccgcctga
DBGET
integrated database retrieval system
