Variovorax sp. PMC12: C4F17_10210
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Entry
C4F17_10210 CDS
T05380
Name
(GenBank) type I secretion system permease/ATPase
KO
K12541
ATP-binding cassette, subfamily C, bacterial LapB
Organism
vam
Variovorax sp. PMC12
Pathway
vam02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
vam00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
C4F17_10210
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
vam02000
]
C4F17_10210
02044 Secretion system [BR:
vam02044
]
C4F17_10210
Transporters [BR:
vam02000
]
ABC transporters, eukaryotic type
ABCC (CFTR/MRP) subfamily
ABCC-BAC subgroup
C4F17_10210
Secretion system [BR:
vam02044
]
Type I secretion system
Adhesin protein transporter
C4F17_10210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
AAA_21
SMC_N
AAA_29
RsgA_GTPase
TsaE
MMR_HSR1
Motif
Other DBs
NCBI-ProteinID:
AVQ81290
LinkDB
All DBs
Position
1:complement(2193664..2195781)
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AA seq
705 aa
AA seq
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MKLPSQYTSWLDAMLFVARHYGIGASEENVRVSLAWERGAPLDTLLDHMARQLGLTVRLG
EFSETLLDPWRLPLVVEFDNGEVGVVRASNGRGQLGVLLGGDHGLETALPLDELRRRAKR
VAVLRPNTAVPDARVDDYIKPYKANWFRAIALRDWRRYGDIMLASMFANVLALASMIFSM
QIYDRVVPAQSEPTLWVLFGGVMLAVAFEFMLRVSRTHISDVVGKRADLKVSDVVFGHAL
RLRTNARSKSTGSFIAQVREVEQVRELLTSTTISAVADLPFFLLFLVVLWLVAGPLALVA
LAAVPLLVIPGLLIQKPLARLASEGMRESALRNALLVEAVEGIEDIKLMRAEPRFQNQWN
HVNDVSAGVSMRQRFLTSMLMTWTQEVQTIVYAVVLLAGCFLVMRGDMTTGALVGSSILA
SRMISPLAQLSSVFARWQQAKVARAGLDQLMQRPVDQADGTRLVHAPALHGHYALAGVEF
RYGKDDKSPALAVAQLQIQAGEKVALLGRMGAGKSTLLQLLSGLQSPQQGHVALDSLDLS
LIDPADLRRDVGLLTQNARLFHGSIRENVTMGMPLATDDQVFEAIAMAGALPFLQSRAEG
LDELIHEGGLGLSGGQRQALLLARTLIRQPSIVLLDEPTAHFDEVTERHVIDLVGNWMGP
RTLVVATHRMPVLQWVDRIVVIDGGRIVMDGSKEQVLGRLSHGNA
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
atgaagttgccttcgcagtacacgagctggctcgacgccatgcttttcgtcgcccgccac
tacggcataggcgcttcagaggagaacgtgcgcgtctcgctggcctgggagcgcggcgcg
ccgctggacacgctgctcgatcacatggcgcgccagctcggcctgacggtgcggctgggc
gaattctccgaaacgctgctcgacccatggcgcctgccgctggtggtggagttcgacaac
ggcgaggtcggcgtggtgcgagcctccaacggccgtggccagctgggcgtgctgctcggg
ggcgaccatgggctcgagacggcgctgccgctcgacgaactgcgccgccgcgcgaaacgc
gtggccgtgctgcggcccaacaccgccgtgcccgatgcgcgcgtggacgactacatcaag
ccctacaaggccaactggttccgggccatcgcgctgcgcgactggcggcgctacggcgac
atcatgctcgcctcgatgttcgcgaacgtgctggcactggcgtcgatgatcttctcgatg
cagatctacgaccgcgtggtgcccgcgcagtcggagccgacgctgtgggtgctgttcggt
ggcgtgatgctggcggtggccttcgagttcatgctgcgcgtgtcgcgcacccacatctcc
gacgtggtcggcaagcgcgccgacctcaaggtgtcggacgtcgtgttcggccatgcgctg
cgtctgcgcaccaatgcgcgttccaagtcgacaggctccttcatcgcccaggtgcgcgag
gtggagcaggtgagggagttgcttacctccaccaccatctccgccgtggccgacctgccg
ttcttcctgctgttcctggtcgttctctggctggtggccggaccgcttgcgctggttgcc
ctggcggcggtgccgttgctggtcattccgggcctgctcatccagaagccgctggcgcgc
ctggcgagcgaaggcatgcgcgaatcggccttgcgcaacgccctgttggtcgaggcggtc
gaaggcatcgaggacatcaagctcatgcgcgccgagccgcgcttccagaaccagtggaac
cacgtcaacgacgtgtccgccggcgtcagcatgcggcaacgctttctcacgagcatgctc
atgacgtggacgcaagaggtgcagaccatcgtgtatgccgtggtgctgctggcgggctgc
ttcctcgtgatgcgcggcgacatgacgacgggcgcgctggtgggctcgtcgatcctcgcg
tctcgcatgatctcgccgctggcgcagttgtcgagcgtgttcgcgcgctggcagcaggcc
aaggtggcgcgcgccggcctcgaccagctcatgcagcgcccggtcgaccaggccgacggc
acgcggctggtgcatgcgccggcgctgcacgggcattacgcactggccggcgtcgagttt
cgctatggcaaggacgacaagagcccggcgctcgcagtcgcgcaattgcagattcaggca
ggcgagaaggtcgcgttgctgggccgcatgggcgcgggcaaatccacgttgctgcaactg
ctgtccggcctgcagtcgccgcagcagggccacgtggcgctcgattcgctcgacctttcg
ctgatcgacccggccgacctgcgccgcgacgtcggcctgctcacgcagaacgcgcggctc
ttccacggctccatccgtgagaacgtgacgatgggcatgccgctggccaccgacgaccag
gtgttcgaggccatcgcgatggcgggtgccttgccatttctccagtcgcgcgccgagggg
ctggacgaactcattcacgagggcggcctgggtctgtccggcgggcagcggcaggcattg
ctgctcgcgcgtacgctgatccggcagccgtcgatcgtgctgctcgacgaaccgaccgcg
catttcgacgaggtcactgaacggcacgtgatcgatctggtcggcaactggatggggccg
cgcacgctggtggtggcaacgcatcgcatgccggtgctgcagtgggtggaccgcatcgtg
gtgatcgatggcggccgcatcgtgatggatggttcgaaggaacaggttcttggaaggctc
tcacatggcaacgcctga
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