Variovorax sp. PMC12: C4F17_10345
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Entry
C4F17_10345 CDS
T05380
Name
(GenBank) DNA gyrase subunit A
KO
K02469
DNA gyrase subunit A [EC:
5.6.2.2
]
Organism
vam
Variovorax sp. PMC12
Brite
KEGG Orthology (KO) [BR:
vam00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vam03032
]
C4F17_10345
03400 DNA repair and recombination proteins [BR:
vam03400
]
C4F17_10345
Enzymes [BR:
vam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
C4F17_10345
DNA replication proteins [BR:
vam03032
]
Prokaryotic type
DNA Topoisomerases
C4F17_10345
DNA repair and recombination proteins [BR:
vam03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
C4F17_10345
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_topoisoIV
DNA_gyraseA_C
Motif
Other DBs
NCBI-ProteinID:
AVQ81313
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Position
1:2233046..2235691
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AA seq
881 aa
AA seq
DB search
MTSFAKETLPISLEEEMRSSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELNNDWN
RPYKKSARIVGDVIGKYHPHGDQSVYDTIVRLAQDFSMRHMLVDGQGNFGSVDGDNAAAM
RYTEIRLAKIAHEMLADIDKETVDFQDNYDGSEKEPKVLPSQLPNLLVNGSGGIAVGMAT
NIPPHNLNEVVDACLYLLRNPEASIDELMEIVPAPDFPTAGIIYGINGVKDGYRTGRGKV
VMRAKCHFEDIDRGQRQAIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSG
MRLVIELKRGEVPEVVLNNLYKQTQLQDTFGINMVALVDGQPKLCNLKDLIQVFLQHRRE
VVTRRTVFNLRKARERGHVLEGLAVALANIDEFIRIIRESPTPPVAKAELMTRSWDSKLV
REMLTRSRADGGVINADDYRPEGLERQYGMGGDGLYRLSDTQAQEILQMRLQRLTGLEQD
KIVAEYKDVMAEIDDLLDILAKPERVSTIIGDELGTIKQEFGQSKVGARRSLVEHSAYDL
STEDLITPTDMVVTLSHSGYIKSQPLGEYRAQKRGGRGKQATATKEDDWIDQLFIANTHD
YILCFSNRGRLYWLKVWEVPAGSRGSRGRPIVNMFPLQEGEKINVALALTGEKRTFPADQ
YVFMATSMGTVKKTALDEFNNPRKGGIIAVNLDEGDYLIGAALTDGKHDVMLFSDGGKAV
RFDEEDVRPLGRNARGVRGMSLDPGQGVIAMLVAEDEQQSVLTATENGYGKRTSITEYTR
HGRGTKGMIAIQQSERNGKVVAATLVHSDDEIMLITDKGVLVRTRVAEIRELGRATQGVT
LIGLDEGAKLSGLQRIVENDANGETEPDADDTSSSSTENPQ
NT seq
2646 nt
NT seq
+upstream
nt +downstream
nt
atgacctccttcgcaaaagaaaccctgcccatcagtcttgaagaggaaatgcgcagcagc
tatctcgattacgccatgagcgtgatcgtcggccgagcgcttcccgacgcccgtgacggc
ctcaagccagtacaccggcgcgtgctctacgcgatgcacgaactcaacaacgactggaac
cggccgtacaagaagtccgcccgtatcgtcggtgacgtgatcggtaagtaccacccgcac
ggcgaccagtcggtctacgacaccatcgtccggctggcccaggacttctccatgcgccac
atgctggtcgacggccagggcaacttcgggtcggtcgatggagacaacgcggccgcaatg
cgttatacggaaatccggctggccaaaattgcgcacgaaatgctggccgatatcgacaag
gaaactgtcgacttccaggacaattacgacggttccgaaaaagagccgaaggtgctgccg
agccagttgcccaatttgcttgtgaacggctcgggcggtattgcggtcggcatggccacc
aatattccgccgcacaacctgaacgaggtcgtcgacgcctgcctctacctgcttcgcaac
cccgaagcctccatcgacgaactgatggaaatcgtgccggcgcccgacttccccaccgcc
ggcatcatctacggcatcaacggcgtgaaggacggctaccgtacaggccgcggcaaggtc
gtgatgcgcgccaaatgccacttcgaggacatcgaccgcggccagcgccaggcgatcatc
gtcgacgagctcccctaccaggtcaacaagaagacgctgcaggagcgcatggccgagctg
gtgcacgagaagaagatcgaaggcatcagccacatccaggacgagtccgacaagtcgggc
atgcgcctagtgatcgagctcaagcgcggcgaagtgcccgaggtcgtgctcaacaacctc
tacaagcagactcagctgcaggacaccttcggcatcaacatggtggcgctggtcgacggc
cagcccaagctgtgcaacctgaaggacctgatccaggtcttcctgcagcaccgccgcgaa
gtggtcacgcgccgcaccgtcttcaatctgcgcaaggcacgcgagcgcggccatgtgctc
gaaggcctggcagtggcgctggcgaacatcgacgagttcatccgcatcatccgcgaatcg
cccacgccgccggtcgccaaggccgagctcatgacgcgcagctgggacagcaagctggtg
cgcgagatgctcacgcgctcgcgcgccgacggcggcgtgatcaacgccgacgactaccgc
cccgagggcctcgaacgccagtacggcatgggcggcgacggcctctatcgcctctcggac
acgcaagcccaggaaatcctgcagatgcgcctgcagcgcctgaccggcctcgagcaggac
aagatcgtggccgagtacaaggacgtcatggccgagatcgacgacctgctcgacatcctg
gccaagcccgagcgcgtctcgaccatcatcggcgacgagctgggcaccatcaagcaggag
ttcggccagtcgaaggttggcgcgcgccgcagcctggtggagcacagcgcctacgacctc
tcgaccgaagacctgatcaccccgaccgacatggtggtgacgctctcgcacagcggctac
atcaagagccagccgttgggcgagtaccgcgcccagaagcgcggcggccgcggcaagcag
gccacggccaccaaggaagacgactggatcgaccagctcttcatcgccaacacgcacgac
tacatcctgtgcttctcgaaccgcggccggctgtactggctcaaggtatgggaagtgcct
gcgggttcccgcggctcgcgcggccgtccgatcgtcaacatgttcccgctgcaggaaggc
gagaagatcaacgtcgccctcgccctcaccggcgaaaagcgcaccttcccggccgaccag
tacgtgttcatggcgacctcgatgggcaccgtcaagaagaccgcgctcgacgagttcaac
aacccgcgcaagggcggcatcattgccgtgaacctggacgagggcgactacctgatcggc
gccgccctgaccgacggcaagcacgacgtgatgctcttcagcgacggcggcaaggccgtg
cgcttcgacgaggaagacgtccgcccgctgggccgcaacgcgcgcggcgtgcggggcatg
tcgctcgacccgggccagggcgtgatcgccatgctggtggccgaggacgagcagcaaagc
gtgctcaccgcgaccgaaaacggttacggaaaacgcacaagcattacggaatacacgcgc
cacggccgcggaaccaaaggcatgatcgcgattcaacagagtgagcgcaacggcaaggtc
gttgccgccacactcgtgcattcggatgatgagatcatgctcattaccgacaagggcgtg
cttgtacgcacgcgggttgccgagattcgcgaactgggtcgtgcgacgcaaggcgtcacg
ctgatcggactcgacgaaggcgccaaactcagcgggctgcaacgtatcgtcgaaaacgac
gcgaatggcgaaaccgagcctgacgcggacgatacttcctcatcttcaacggagaatcct
cagtga
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