Variovorax sp. PMC12: C4F17_10595
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Entry
C4F17_10595 CDS
T05380
Symbol
xseB
Name
(GenBank) exodeoxyribonuclease VII small subunit
KO
K03602
exodeoxyribonuclease VII small subunit [EC:
3.1.11.6
]
Organism
vam
Variovorax sp. PMC12
Pathway
vam03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vam00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
C4F17_10595 (xseB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vam03400
]
C4F17_10595 (xseB)
Enzymes [BR:
vam01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.6 exodeoxyribonuclease VII
C4F17_10595 (xseB)
DNA repair and recombination proteins [BR:
vam03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
C4F17_10595 (xseB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_VII_S
NBAS_11th
Motif
Other DBs
NCBI-ProteinID:
AVQ81359
LinkDB
All DBs
Position
1:complement(2287332..2287598)
Genome browser
AA seq
88 aa
AA seq
DB search
MPKVPTPSSSSPAATPDTGPLPASYEAGLQELEKLVAELESGQLPLDQLLVSYQRGAALL
AFCRDKLQAVEDQIKVLDAGSLKVWTSE
NT seq
267 nt
NT seq
+upstream
nt +downstream
nt
atgcccaaggtgccaaccccttcctcgtccagcccggcggcaacgcctgatacgggcccg
ctgcccgccagttacgaagccgggctccaggagctggagaaactggttgcggaactcgaa
tcaggccagctgcccctcgaccagttgctcgtcagctaccagcgcggcgccgcgctgctc
gccttctgccgcgacaagctgcaggcggtcgaagaccagatcaaggtgctcgatgcgggc
agcctgaaggtctggacttccgaatga
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