KEGG   Variovorax sp. PMC12: C4F17_10730
Entry
C4F17_10730       CDS       T05380                                 
Name
(GenBank) DNA polymerase I
  KO
K02335  DNA polymerase I [EC:2.7.7.7]
Organism
vam  Variovorax sp. PMC12
Pathway
vam03030  DNA replication
vam03410  Base excision repair
vam03420  Nucleotide excision repair
vam03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:vam00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    C4F17_10730
   03410 Base excision repair
    C4F17_10730
   03420 Nucleotide excision repair
    C4F17_10730
   03440 Homologous recombination
    C4F17_10730
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:vam03032]
    C4F17_10730
   03400 DNA repair and recombination proteins [BR:vam03400]
    C4F17_10730
Enzymes [BR:vam01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     C4F17_10730
DNA replication proteins [BR:vam03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     C4F17_10730
DNA repair and recombination proteins [BR:vam03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA polymerase I
     C4F17_10730
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     C4F17_10730
SSDB
Motif
Pfam: DNA_pol_A 5_3_exonuc_N DNA_pol_A_exo1 5_3_exonuc DNA_polI_exo1 HHH_2 PylC-like_N
Other DBs
NCBI-ProteinID: AVQ81383
LinkDB
Position
1:complement(2316596..2319415)
AA seq 939 aa
MTDKKTLLLVDGSSYLYRAFHAMPDLRAVPGDPKSPATGAIRGMINMMTALRREVRADYA
ACIFDAPGKTFRDDWYPEYKANRSPMPDDLRSQIDPIHEVVRLLGWPVLSVPDVEADDVI
GTLAKIAAAQGIEVIVSSGDKDLSQLVDEHITIIDTMNGKKRDVAGVTAEFGVPPHLMVD
YQTLVGDSVDNVPGVPKVGPKTAAKWLLEYGSLDALVERAAEVKGAAGENLRGALDKLPL
SKRLVTIRTDCDLDGHVAGLPSLESLPVGAPQTAELKPFYEKFGFKSLVKTLEAQEVPPE
LIEESIKKKKAGAKAGKDQGGLFDEPADMSALEAAAPASNLKYDTVMTWEQFDAWLARLE
ASELAAIDTETTSLDEMVAQIVGVSFSVTPGEAAYIPLAHNYPDAPQQLPIDEVLARLKP
WLENGDKKKLGQHIKYDRHVFANHGIEVQGYAHDTMLQSYVLEVHKPHGLSSLAERHLGR
SGISYEDLCGKGAHQIPFSQVDIAKAAEYSCEDSDQTLDVHNTLWPQLERDEKLRFIYQL
EMDSSEALYRIERNGVLIDAPTLASQSHELGTRIMALEQEAYDIAGQPFNLGSPKQIGEI
FFTKLGLPVIKKTPSGAPSTDEEVLEKLAEDYPLPAKILEHRGLSKLKGTYTDKLGQLAN
PRTGRVHTHYAQAVAVTGRLSSNDPNLQNIPIRTPEGRRVREAFVAPAGSVIASADYSQI
ELRIMAHISGDESLLRAFTEGIDVHRATAAEVFGSTPGEVSSEQRRYAKVINFGLIYGMS
SFGLARNLGIETKAAASYIERYFARYPGVKAYMDETKALAKEQGYVETVFGRRLYLPEIN
SPNGPRRGGAERAAINAPMQGTAADLIKLSMVKVQNVLDEEKRGTKMIMQVHDELVFEVP
EAEVEWVRTEIPRIMAGVAALKVPLLAEIGVGPNWDKAH
NT seq 2820 nt   +upstreamnt  +downstreamnt
atgaccgacaagaaaacgctgctgctcgtggatggctcgagctacctctaccgtgccttc
catgccatgcccgaccttcgggccgtgcccggcgacccgaagagcccggccaccggcgcc
atccggggaatgatcaacatgatgaccgcgctgcgccgcgaggtccgcgccgactacgcg
gcctgcatcttcgacgcgcccggcaagactttccgcgacgactggtaccccgaatacaag
gccaaccgctcgcccatgcccgacgacttgcgcagccagatcgaccccatccacgaggtg
gtcaggctgctcggctggcccgtgctcagcgtgcccgacgtggaggccgacgacgtgatc
ggcacgctcgccaagatcgccgccgcgcagggcatcgaggtgatcgtctccagcggcgac
aaggacctgagccagctggtcgacgagcacatcaccatcatcgacaccatgaacggcaag
aagcgcgacgtggccggcgtgacggccgagttcggcgtgccgccgcacttgatggtcgac
taccagacgctggtgggcgactccgtcgacaacgtgcccggcgtgcccaaggtcggtccc
aagacggcggccaagtggctgctggaatacggctcgctcgacgcgctggtcgaacgcgcc
gctgaagtgaagggcgccgccggcgaaaacctccgcggcgcgctcgacaagctgccgctg
agcaagcgcctggtcacgatccgcaccgactgcgacctcgacggccacgtcgccgggctg
ccgtcgctcgaaagcctgccggtcggcgcgccgcagacggccgagctcaagcccttctac
gagaagttcggcttcaagagccttgtgaagacgctcgaggcgcaggaagtgccgcccgag
ctgatcgaggaaagcatcaagaagaagaaagccggcgccaaggccggcaaggaccagggc
ggcctgttcgacgagcccgccgacatgtcggcgctggaggcggcggctcccgcgagcaat
ctcaagtacgacaccgtcatgacctgggagcagttcgatgcgtggcttgccaggctggag
gcatcggagctggccgccatcgacaccgagaccacctcgctcgacgagatggtcgcgcag
atcgtcggcgtgagcttcagcgtcacgcccggcgaggcggcctacattccgctcgcgcac
aactatcccgacgcgccccagcagctgcccatcgacgaagtgctcgccaggctcaagccc
tggctggagaacggcgacaagaagaagctcggccagcacatcaagtacgaccgccacgtg
ttcgccaaccatggcatcgaggtgcagggctatgcgcacgacaccatgctgcagagctac
gtgctcgaagtgcacaagccgcacggcctgtcgagcctggccgagcgccacctgggccgc
agcggcatctcgtacgaagacctgtgcggcaagggtgcgcaccagatcccgttcagccag
gtcgacatcgccaaggctgccgaatactcgtgcgaggacagtgaccagacgctcgacgtc
cacaacaccctctggccccagctggagcgcgacgaaaagctgcgcttcatctaccagctc
gaaatggattcgagcgaggcgctctaccgcatcgagcgcaacggcgtgctgatcgacgcg
cccacgctggcctcgcagagccacgaactcggcacgcgcatcatggcgctcgagcaggag
gcctacgacatcgccgggcagcctttcaacctcggctcgcccaagcagatcggcgagatc
ttcttcaccaagctgggcctgcccgtgatcaagaagacgccgagcggcgcgcccagcacc
gacgaggaagtgctcgagaaactggccgaggactacccgctgcccgccaagatcctcgag
caccgaggcctgtcgaagctcaagggcacctacaccgacaagctgggacagctcgccaat
ccgcgcaccggccgcgtgcacacgcactatgcgcaggccgtggccgtcaccgggcgcctg
agcagcaacgaccccaacctgcagaatatcccgatccgcacgcccgaaggccgccgcgtg
cgcgaggctttcgtggcgcccgccggcagcgtgatcgccagcgccgactactcgcagatc
gagctgcgcatcatggcccacatcagcggcgacgagtcgctgctgcgcgcgttcaccgaa
ggcatcgacgtgcaccgcgccacggcggccgaggtgttcggctccacgccgggcgaggtg
tcgagcgagcagcgccgctatgccaaggtcatcaacttcgggctgatctacggcatgagc
agcttcgggctggccaggaacctcggcatcgagaccaaggccgcggcgtcctacatcgaa
cgctacttcgcgcgctacccgggcgtgaaggcctacatggacgagaccaaggcgctggcc
aaggagcagggctacgtggagaccgtgttcggccggcgcctgtacctgcccgagatcaac
tcgcccaacggcccgcgccgcggcggcgccgagcgcgcggccatcaacgcgccgatgcag
ggcacggcggccgacctcatcaagctcagcatggtgaaggtacagaacgtgcttgacgaa
gagaagcgcggcacgaagatgatcatgcaggtgcacgacgaactggtgttcgaagtgccc
gaggcagaggtcgaatgggtgcgcacggaaatcccgcgcatcatggccggcgttgccgcg
ctgaaggtgccgctgctcgccgagatcggcgtcggccccaactgggacaaggcgcattga

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