Variovorax sp. PMC12: C4F17_10760
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Entry
C4F17_10760 CDS
T05380
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
vam
Variovorax sp. PMC12
Pathway
vam03420
Nucleotide excision repair
vam03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vam00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C4F17_10760
03430 Mismatch repair
C4F17_10760
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vam03400
]
C4F17_10760
Enzymes [BR:
vam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C4F17_10760
DNA repair and recombination proteins [BR:
vam03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
C4F17_10760
MMR (mismatch excision repair)
Other MMR factors
C4F17_10760
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_12
Viral_helicase1
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AVQ81388
LinkDB
All DBs
Position
1:complement(2327187..2329622)
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AA seq
811 aa
AA seq
DB search
MLFNDPAADAHSPNPSDLPLLKNLNAEQLAAVTLPAGNALILAGAGSGKTRVLTTRIAWL
LQTGQVSAGGILAVTFTNKAAKEMMTRLTAILPVNVRGMWIGTFHGLCNRLLRAHWKLAN
LPSTFQILDTQDQLSAIKRLMKQFNVDDERFPAKQTQWFIAGAKEDGLRPGDVEVRSDDD
RKKVELYQLYEEQCQREGVVDFGELMLRSYELLRDNDPVREHYQRRFRHILIDEFQDTNR
LQYAWIKMLSGNTVGGQFEPGRDNSVIAVGDDDQSIYAFRGARVGNMTDFVREFDVRHQI
KLEQNYRSYSNILDSANELISHNKKRLGKNLRTDQGPGEPVRVYESTTDLAEAQWMVEEM
RQLARDGFDRKEMAVLYRSNAQSRVIETALFNASVPYRVYGGLRFFERAEIKHALAYLRL
LENKDDDTSFLRVVNFPPRGIGARTLETLQDAARAAGRSLHDAVSVVGGKAGANLTGFVA
KIDVLREQTQGVSLREIIELVLDHSGLVEHYKADREGADRIENLEELVNAAESFVTQEGF
GRDAVALPVDELRQSPASQGIDLARPVIDEPLAPDAETGETLSPLAAFLTHAALESGDNQ
AQAGQDAVQLMTVHAAKGLEFDCVFITGMEEGLFPHENSMSDFESLEEERRLMYVAITRA
RKRLYLSHSQTRMLHGQTRYNVKSRFFEELPEGALKWLTPKNQGFGGGTSAFGYGGGYGS
TRGGGGGGGGYGANSYGGSRDKDTFASPPVPPQKTAPSHGLRSGMQVFHNKFGEGTVTAL
EGTGDDARAQVKFARHGVKWLALSVAKLTPI
NT seq
2436 nt
NT seq
+upstream
nt +downstream
nt
atgttgtttaatgatcctgcggctgacgcccactccccgaatccttcggacctgccgctg
ctcaagaacctgaacgcggagcaactggccgcggtcacgttgcccgcaggcaacgcgctg
atcctcgcgggcgccggttccggcaagacccgcgtgctgaccacgcgcatcgcatggctg
ctccagaccgggcaggtgtcggccggcggcatcctcgccgtgaccttcaccaacaaggcc
gccaaggaaatgatgacgcggctgacggccatcctgcccgtcaacgtgcgcggcatgtgg
atcggcaccttccacggcctgtgcaaccgcctgctgcgcgcgcactggaagctggccaac
ctgccgtccaccttccagatcctcgacacgcaagaccagctttcggccatcaagcggctg
atgaagcagttcaacgtcgacgacgagcgcttccccgccaagcagacccagtggttcatt
gccggcgccaaggaagacggcctgcgccccggcgacgtcgaggtgcgcagcgacgacgac
cgcaagaaggtcgagctctaccagctgtatgaagagcagtgccagcgcgaaggcgtggtc
gacttcggcgagctcatgctgcgcagctacgaactgctgcgcgacaacgacccggtgcgg
gagcactaccagcggcgcttccgccacatcctgatcgacgagttccaggacaccaaccgc
ctgcagtacgcgtggatcaagatgctctccggcaacaccgtcggcggccagttcgagccc
gggcgcgacaacagcgtgattgccgtgggcgacgacgaccagagcatctatgcgttccgc
ggcgcgcgcgtgggcaacatgaccgacttcgtgcgcgaattcgacgtgcgccaccagatc
aagctggagcagaactaccgcagctacagcaacatcctcgattcggccaacgagctcatc
agccacaacaagaagcgcctgggcaagaacctgcgcaccgaccagggccccggcgaaccg
gtgcgcgtgtacgagtcgaccaccgacctggccgaggcgcagtggatggtggaagaaatg
cgccagctcgcgcgcgatggcttcgatcgcaaggagatggccgtgctctaccgcagcaat
gcgcagagccgggtgatcgaaaccgcgctcttcaatgcgtccgtgccgtaccgcgtgtac
ggcggcctgcgcttcttcgagcgcgcggaaatcaagcatgcgctggcctacctgcggctg
ctcgagaacaaggacgacgacaccagcttcctgcgcgtcgtgaacttcccgccgcgcggc
atcggtgcgcgcacgctcgaaaccctgcaggacgcggcccgcgcggccggccgttcgctg
cacgacgcggtgagcgtggtcggcggcaaggcgggcgccaacctcaccggcttcgtcgcc
aagatcgacgtgctgcgcgagcagacgcagggcgtgagcctgcgcgagatcatcgagctg
gtgctcgaccacagcggcctcgtcgagcactacaaggccgaccgcgaaggcgccgaccgc
atcgagaacctggaggaactggtgaacgcggccgagagcttcgtcacgcaggagggcttc
ggccgcgacgcggtggcgctgccggtcgacgaactgcgccagtcgcccgcgagccagggc
atcgacctggcgcgcccggtgatcgacgagccgctcgcgcccgacgcggagaccggcgaa
acgctgagcccgctggccgcgttcctcacgcatgcagcgctggagtcgggcgacaaccag
gcgcaggccgggcaggacgcggtgcagctgatgaccgtgcacgccgccaagggcctggag
ttcgactgcgtgttcatcaccggcatggaagagggcctgttcccgcacgagaactcgatg
agcgacttcgagagcctcgaggaagagcgccgcctgatgtacgtggcgatcacccgtgcc
cgcaagcgcctgtacctgagccattcgcagacccgcatgctgcacggccagacccgctac
aacgtcaagagccggttcttcgaggagctgcccgagggcgcgctcaagtggctcacgccc
aagaaccagggtttcggcggcggcacttcggccttcggatacggcggcggctacggcagc
acgcgtggcgggggaggcggcggtggcggctacggcgccaacagctacggcggcagccgc
gacaaggacaccttcgccagcccgccggtgccgccgcagaagacggcgccttcgcacgga
ctgcgctcgggcatgcaggtgttccacaacaagttcggcgaaggcacggtgacggccctc
gaaggcaccggcgacgacgcgcgggcgcaggtcaagttcgcgcggcacggcgtcaagtgg
ctggccttgtcggtggccaagctcacgccaatctga
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