Variovorax sp. PMC12: C4F17_11525
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Entry
C4F17_11525 CDS
T05380
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
vam
Variovorax sp. PMC12
Pathway
vam03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vam00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C4F17_11525
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vam03019
]
C4F17_11525
03009 Ribosome biogenesis [BR:
vam03009
]
C4F17_11525
Enzymes [BR:
vam01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
C4F17_11525
Messenger RNA biogenesis [BR:
vam03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
C4F17_11525
Ribosome biogenesis [BR:
vam03009
]
Prokaryotic type
rRNA processing factors
C4F17_11525
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
dnstrm_HI1420
zf-C2HC_3
Motif
Other DBs
NCBI-ProteinID:
AVQ81534
LinkDB
All DBs
Position
1:2475746..2478982
Genome browser
AA seq
1078 aa
AA seq
DB search
MKRMLINATQAEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDY
GEDRHGFLPFKEISKQYFAEGVSASQARIQDAIREGQELTVQVEKEERGNKGAALTTFIS
LAGRYVVLMPNNPRGGGVSRRIEGDDRAELKEAMDQLEYPKGMSIIARTAGIGRSAPELQ
WDLNYLLKLWSAIDGAAKGGKGAFLIYQESSLVIRAIRDYFNHDIGDILIDTDDIYDQAQ
QFMAHVMPEHAARVKRYRDDAALFSRFQIEHQIESAYARTVQLPSGGAIVIDHTEALVSV
DVNSARAIKGGDIEETATRTNLEAADEVARQMRLRDLGGLIVIDFIDMDESKNRREVESR
LRDALRQDRARVQFGSISKFGLMEMSRQRLKPALSEGSSIPCPRCGGSGHIRDTESSALQ
ILRIIQEESMKDNTAAVHVQVPVEVASFLLNEKRPEIAKIELKQRVTVLMVPNKTLETPN
YKLERLKHDDPRLDHIEASYKMADEIEDPTSVTRRSQEPTNKQTPVIKGVLPDAPAPVVP
PKPEAVRAPVAAPAPVAPPVVTAPVPAQTGFFAWIKNLFGGAPAPAPAPAPSAIPVEAPK
PRRDGRPGRDGEARGGSRDGEQRRGGRGGEGRGEGRNAEGRGEGGGRSGGRDGERRGGRG
GERREGREGREGRNSSELRADGAPQQPREQREPREPREARAPRDGEQRRNGRGERREGEG
REGRNAPAEALDGNLNLEAQQLVSGEEGNAGERAPRARGERRERGERNERGEQRGERNNS
DRAERNGDAQQPRGETALAGEEAVQGERQPRNGRDEQRAPRGERGGERGERNDGRRERRN
DAPQAEADARGAEAAAADVEQSNDGGNEQAPRREGDERRGRSRDRYGRDRRERGPRDDSE
AGAQAAEVAVAEAATMTTGVQEEAPAPRRQPQQQLPIAPEQQQAVVAEAAVAAPEVREPA
PQPVRTERPAPVAAAPVAAPAPVANGRALPKVQPFELPLDELAQIAQNSGLQWVNSDAER
IAQARAAIAAEPKPVHVPRERPPVVVLDEGPLVLVETRRDLGSMSLPFEQQQQQQHPL
NT seq
3237 nt
NT seq
+upstream
nt +downstream
nt
atgaagcggatgctgatcaatgccacgcaggccgaagaacgccgcctggccatcgtcgac
gggcagaaactgctcgactacgaaatcgaaatcgaagggcgcgaacagcgcaagggcaac
atctacaaggcggtcgtgacccgcgtcgagccctcgctcgaagcctgtttcgtcgactac
ggcgaagaccgccacggcttcctgccgttcaaggaaatctccaagcagtatttcgccgaa
ggcgtgtcggccagccaggcccgcatccaggacgcgatccgcgaaggccaggaactcacc
gtccaggtcgaaaaggaagagcgcggcaacaagggcgccgccctcaccaccttcatctcg
ctggccggccgctacgtcgtgctgatgccgaacaacccccgcggcggtggcgtttcgcgc
cgcatcgagggcgacgaccgcgccgaactcaaggaggcgatggaccagctcgagtacccg
aagggcatgagcatcatcgcgcgcaccgccggcatcggccgctcggcgcccgaactccag
tgggacctgaactacctgctcaagctctggagcgccatcgacggcgcggccaagggcggc
aagggcgctttcctgatctaccaggaatcgtcgctcgtcatccgcgccatccgtgactat
ttcaatcacgacatcggcgacatcctgatcgacaccgacgacatctacgaccaggcgcag
cagttcatggcgcacgtcatgcccgagcatgccgcccgcgtgaagcgctaccgcgacgac
gcagcgctgttcagccgcttccagatcgagcaccagatcgagtcggcctacgcgcgcacc
gtgcagctgccctcgggcggcgccatcgtgatcgaccacaccgaagcactggtttcggtc
gacgtgaactcggcccgcgccatcaagggcggcgacatcgaggagaccgccacccgcacc
aacctcgaggccgccgacgaagtggcccgccagatgcgcctgcgcgacctgggcggcctg
atcgtcatcgacttcatcgacatggacgagtcgaagaaccgccgcgaagtcgaaagccgc
ctgcgcgacgcgctgcggcaggaccgcgcccgcgtgcagttcggctcgatcagcaagttc
ggcctgatggaaatgagccgccagcgcctgaagccggcactgtcggaaggctcgtcgatc
ccctgcccccgctgcggcggctcgggccacatccgcgacaccgaatcgagcgcgctgcag
atcctgcgcatcattcaggaagagtccatgaaggacaacacggccgccgtgcatgtgcag
gtgcccgtggaagtcgcatcgttcctgctgaatgaaaagcgccccgaaatcgccaagatc
gagctcaagcagcgcgtcaccgtgctgatggtgcccaacaagacgctcgaaacgccgaac
tacaagctcgagcgcctgaagcacgacgatccgcgcctcgaccacatcgaagccagctac
aagatggccgacgagatcgaagacccgacctccgtcacgcgccgttcgcaagagcccacc
aacaagcagacgccggtcatcaagggcgtgctgcccgatgcacccgcgcccgtggtgccg
cccaagcccgaagccgtgcgcgcgcccgtcgcggcacccgcaccggtcgcaccgcccgtg
gtcaccgcgccggttccggcacagaccggcttcttcgcctggatcaagaacctgttcggc
ggcgcgccggcccccgcaccggcgccggcgccctccgcgattccggtcgaggccccgaag
ccccgccgcgacggccgccccggccgcgacggcgaagcacgcggcggttcgcgtgacggc
gaacagcgccgtggcggccgtggcggcgaaggccgcggtgaaggccgcaacgcggaaggc
cgcggcgaaggcggcggacgttcgggtggtcgcgacggcgaacgccgtggcggccgcggc
ggcgagcgccgtgaaggacgcgaaggccgtgaaggccgcaacagcagcgaactgcgcgcc
gacggcgccccgcagcaaccgcgcgaacagcgcgaaccccgcgagccgcgtgaggcacgc
gcaccgcgcgacggcgaacaacgccgcaacggccgcggcgagcgccgcgaaggcgaaggc
cgcgaaggccgcaacgcaccggcggaagcactcgacggcaacctgaacctcgaagcccag
caactggtctcgggcgaagaaggcaatgcaggcgaacgcgcaccgcgcgcccgcggcgaa
cgccgtgaacgcggcgagcgcaacgagcgtggcgaacaacgcggcgagcgcaacaacagc
gaccgcgccgaacgcaacggcgacgcccagcagccccgcggcgaaaccgcccttgccggc
gaagaagccgtccagggcgagcgccagccgcgcaacggccgcgacgagcagcgcgctccg
cgcggtgaacgtggtggtgagcgtggtgagcgcaacgacggccgccgcgagcgccgcaac
gacgcgcctcaggccgaagccgatgcacgcggggccgaagctgcagcagccgacgtcgag
cagtccaacgacggcggcaacgagcaggctccccgccgcgaaggcgacgagcgccgcggt
cgttcgcgtgaccgttacggccgcgaccgccgcgaacgcggtccgcgcgacgacagcgaa
gccggtgcgcaggccgccgaagtcgccgtggcggaagccgcgacgatgacgaccggcgtg
caggaagaagccccggcgccccgccgccagccgcagcagcaactgccgatcgcgccggag
caacaacaggccgtcgtggccgaagccgccgtcgctgcaccggaagtccgcgaacccgca
ccccagccggtgcgcaccgagcgccccgcgccggtcgctgccgcgcccgtggctgctccg
gcgcccgtcgccaacggccgcgcgctgccgaaggtccagcccttcgagctgccgctggac
gaactcgcgcagatcgcccagaactcgggcctgcagtgggtcaactccgacgccgagcgc
atcgcgcaggcacgcgccgccattgccgccgagccgaagccggtgcacgtgccgcgcgag
cgcccgccggtggtggtgctcgacgaaggtccgctggtgctggtcgagacccgtcgcgac
ctcggttcgatgtcgctgccgttcgagcagcaacagcagcagcaacaccccctctga
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