Variovorax sp. PMC12: C4F17_11795
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Entry
C4F17_11795 CDS
T05380
Name
(GenBank) NADP-dependent isocitrate dehydrogenase
KO
K00031
isocitrate dehydrogenase [EC:
1.1.1.42
]
Organism
vam
Variovorax sp. PMC12
Pathway
vam00020
Citrate cycle (TCA cycle)
vam00480
Glutathione metabolism
vam00720
Other carbon fixation pathways
vam01100
Metabolic pathways
vam01110
Biosynthesis of secondary metabolites
vam01120
Microbial metabolism in diverse environments
vam01200
Carbon metabolism
vam01210
2-Oxocarboxylic acid metabolism
vam01230
Biosynthesis of amino acids
vam04146
Peroxisome
Module
vam_M00009
Citrate cycle (TCA cycle, Krebs cycle)
vam_M00010
Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate
Brite
KEGG Orthology (KO) [BR:
vam00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00020 Citrate cycle (TCA cycle)
C4F17_11795
09102 Energy metabolism
00720 Other carbon fixation pathways
C4F17_11795
09106 Metabolism of other amino acids
00480 Glutathione metabolism
C4F17_11795
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
C4F17_11795
Enzymes [BR:
vam01000
]
1. Oxidoreductases
1.1 Acting on the CH-OH group of donors
1.1.1 With NAD+ or NADP+ as acceptor
1.1.1.42 isocitrate dehydrogenase (NADP+)
C4F17_11795
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GFIT
Motif
Pfam:
IDH
CAMP_factor
Motif
Other DBs
NCBI-ProteinID:
AVQ81580
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All DBs
Position
1:2544888..2547125
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AA seq
745 aa
AA seq
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MSSKQPTIVYTLTDEAPLLATYAFLPIIRAFTNPAGIDVTTSDISVAARILGEFPEFLSD
DQKVPDNLAELGKLTLKPEANIIKLPNISASVAQLKAAIKELQGKGYKIPDYPENPTSDE
DKDIRARYNKCTGSAVNPVLREGNSDRRAPKAVKEYARKNPHSMAEWSQASRSHVSHMHG
GDFYHGEKSMTLDRARNVKMELITKSGKTIVLKPKVALLDREVIDSMFMSKKALLAFYEK
EIEDAHKTGVMFSLHVKATMMKVSHPIVFGHCVKIFYKEAFEKHGKLFDELGINVNNGMV
DLYTKIATLPQSTQDEIKRDLHACHENRPELAMVDSAKGITNFHSPNDVIVDASMPAMIR
NGGKMWGADGRLKDVKAVMPESTFARIYQEIINFCKWHGAFDPKTMGTVPNVGLMAQKAE
EYGSHDKTFEIPEDGVANITDLDTGEVLMSENVEQGDIWRMCQVKDAAIRDWVKLAVTRA
RNSGMPVVFWLDAYRPHEAQLITKVKMYLHEHNTSGLDIQIMSQVRAMRYTLERVVRGLD
TISATGNILRDYLTDLFPIMELGTSAKMLSIVPLMAGGGLYETGAGGSAPKHVQQLVEEN
HLRWDSLGEFLALAVSLEDLGLKTGNKKASILAKTLDTATGKLLDNNKNPSPKTGQLDNR
GSQFYLAMYWAQELAAQTEDKELQALFVKLADSLTSNEKKIVEELAAVQGKPVDIGGYYL
ADKTKFEAVMRPSATLNAALASAQG
NT seq
2238 nt
NT seq
+upstream
nt +downstream
nt
atgagctcgaagcaacccaccatcgtctacaccctcaccgacgaggcgcccctgctggcg
acctacgcgtttttgcccatcatccgcgccttcaccaatccggccggcatcgacgtcacc
accagcgacatctcggtggcagcccgcatcctgggcgaatttcccgaattcctgagcgac
gaccagaaggtgccggacaacctggccgaactcggcaagctcacgctcaagcccgaagcc
aacatcatcaagctgcccaacatcagcgcctcggtcgcccagctcaaggctgcgatcaag
gaactgcagggcaagggctacaagattcccgactacccggagaacccgacctcggacgag
gacaaggacatccgcgcgcgctacaacaagtgcaccggcagcgccgtgaacccggtcctg
cgcgaaggcaactccgaccgccgcgcgcccaaggccgtcaaggaatacgcgcgcaagaac
ccgcacagcatggccgagtggagccaggcctcgcgctcgcacgtctcgcacatgcacggc
ggcgacttctaccacggcgaaaagtccatgacgctggaccgcgcgcgcaacgtcaagatg
gagctgatcaccaagagcggcaagaccatcgtgctcaagcccaaggtcgcgctgctggac
cgcgaggtcatcgactccatgttcatgagcaagaaggcactgctggccttctatgaaaag
gaaatcgaggacgcgcacaagaccggcgtcatgttctcgctgcacgtcaaggccaccatg
atgaaggtctcgcaccccatcgtgttcggccactgcgtgaagatcttctacaaggaagcc
ttcgagaagcacggcaagctgttcgacgaactgggcatcaacgtcaacaacgggatggtc
gacctgtacaccaagatcgccacgctgccccagagcacgcaggacgagatcaagcgcgac
ctgcacgcctgccacgagaaccgccccgagctggccatggtcgactcggccaagggcatc
accaacttccattcgcccaacgacgtcatcgtggacgcttccatgcccgcgatgatccgc
aacggcggcaagatgtggggcgccgacggccgcctgaaggacgtgaaggccgtgatgccc
gaatcgaccttcgcccgcatctaccaggagatcatcaacttctgcaagtggcacggcgcc
ttcgaccccaagaccatgggcacggtgcccaacgtgggcctcatggcccagaaggccgag
gagtacggctcgcacgacaagaccttcgagatccccgaagacggcgtcgccaacatcacc
gacctggacaccggcgaagtgctgatgagcgagaacgtggagcaaggcgacatctggcgc
atgtgccaggtcaaggacgccgcgatccgcgactgggtcaagctggccgtcacccgcgcg
cgcaactcgggcatgcctgtggtgttctggctggacgcctaccgcccgcacgaggcgcag
ctgatcaccaaggtcaagatgtacctgcacgagcacaacacctcgggcctggacatccag
atcatgagccaggtgcgcgccatgcgctacacgctggagcgcgtcgtgcgcggcctggac
accatcagcgccaccggcaacatcctgcgcgactacctgaccgacctgttccccatcatg
gaactgggcacctcggccaagatgctgtcgatcgtgccgctgatggccggcggcggcctc
tacgagaccggtgcgggcggctcggcccccaagcacgtgcagcagctggtggaagaaaac
cacctgcgctgggactcgctgggcgaattcctcgcgctggccgtcagcctggaagacctg
ggcctgaagaccggcaacaagaaggcctccatcctggccaagacgctcgacaccgccacc
ggcaagctgctggacaacaacaagaacccgtcgcccaagaccggccagctcgacaaccgc
ggcagccagttctacctggcgatgtactgggcgcaggaactggccgcgcagaccgaagac
aaggaactgcaggcgctgttcgtgaagctggccgactcgctcaccagcaacgagaagaag
atcgtcgaagagctggcggccgtgcagggcaagcccgtcgacatcggcggctactacctg
gccgacaagacgaagttcgaggcggtgatgcgcccgagcgccacgctgaacgcggcgctg
gcttcggcgcaaggctga
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