Variovorax sp. PMC12: C4F17_11880
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Entry
C4F17_11880 CDS
T05380
Name
(GenBank) BMP family ABC transporter substrate-binding protein
KO
K10439
ribose transport system substrate-binding protein
Organism
vam
Variovorax sp. PMC12
Pathway
vam02010
ABC transporters
vam02030
Bacterial chemotaxis
Brite
KEGG Orthology (KO) [BR:
vam00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
C4F17_11880
09140 Cellular Processes
09142 Cell motility
02030 Bacterial chemotaxis
C4F17_11880
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
vam02000
]
C4F17_11880
Transporters [BR:
vam02000
]
ABC transporters, prokaryotic type
Saccharide, polyol, and lipid transporters
Ribose transporter
C4F17_11880
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peripla_BP_4
Peripla_BP_1
Peripla_BP_3
Nuc_deoxyri_tr3
Motif
Other DBs
NCBI-ProteinID:
AVQ81595
LinkDB
All DBs
Position
1:complement(2560455..2561411)
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AA seq
318 aa
AA seq
DB search
MIQRRAVTTTLGAALIGLSGFAAHAQQAQEVYIPLVSKGFQHQFWQAVKSGAEQAAKDFK
VKVTFEGPETEAMVDKQIDMLSAALAKKPQAIGFAALDSQAAIPLLKKAQAAKIPVVAFD
SGVDSDIPVTTTTTDNKAAAALAADKMAELIGKSGEVALVVHDQTSRTGVDRRDGFVNRI
KSAYPNIKIVSVQYGGGDQLKSTEITKSILQASPNLKGIFGANEGSAIGVVNGVKEMKRN
GKVVIIGYDSGKQQKNAIMDGSMAGAITQNPVGMGYKTVEMAVKAIKGEKLPKVVDTGFF
WYDKTNIADPKIAAVLYD
NT seq
957 nt
NT seq
+upstream
nt +downstream
nt
atgatccagagaagagcagtcaccaccacgctgggcgcggccctcatcggcctgtcgggc
tttgcggcgcacgcgcagcaggcacaggaggtctacatcccgctcgtgtccaagggcttc
cagcaccagttctggcaggccgtgaagtcgggcgccgagcaggccgcgaaagacttcaag
gtcaaggtcactttcgaaggccccgagaccgaggcgatggtcgacaagcagatcgacatg
ctctccgccgcgctggccaagaagccgcaggccatcggctttgccgcgctcgacagccag
gccgccattccgctgctgaagaaggcgcaggccgcgaagattcccgtggtggccttcgac
tccggcgtggacagcgacatacccgtcaccaccacgaccaccgacaacaaggccgccgcc
gcgctggccgccgacaagatggccgagctgatcggcaagagcggcgaagtggcgctggtg
gtgcacgaccagaccagccgcaccggcgtggaccggcgcgacggcttcgtcaaccgcatc
aagtcggcctaccccaacatcaagatcgtgagcgtgcagtacggcggcggcgaccagctc
aagtcgaccgagatcaccaagtcgatcctgcaggcatcgcccaacctcaagggcatcttc
ggcgccaacgagggctccgccatcggcgtggtcaacggcgtgaaggagatgaagcgcaac
ggcaaggtcgtgatcatcggctacgactccggcaagcagcagaagaacgcgatcatggac
ggcagcatggccggcgccatcacgcagaatccggtgggcatgggctacaagaccgtggag
atggcggtgaaggcgatcaagggcgagaagctgccgaaggtggtggacaccgggttcttc
tggtacgacaagaccaacatcgccgaccccaagatcgcggccgtactgtacgactga
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