Variovorax sp. PMC12: C4F17_13080
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Entry
C4F17_13080 CDS
T05380
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
vam
Variovorax sp. PMC12
Pathway
vam03410
Base excision repair
vam03430
Mismatch repair
vam03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vam00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
C4F17_13080 (recJ)
03430 Mismatch repair
C4F17_13080 (recJ)
03440 Homologous recombination
C4F17_13080 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vam03400
]
C4F17_13080 (recJ)
DNA repair and recombination proteins [BR:
vam03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
C4F17_13080 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
C4F17_13080 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
C4F17_13080 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
AVQ81810
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All DBs
Position
1:2788270..2790087
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AA seq
605 aa
AA seq
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MKIVDREIPPRTVWALEQAGVHPLLARLFAARGVRAKDELDDGLARLLPPDTLRGTQQAA
VLLANAIAQDKRLCIVADYDCDGATACAVGVRGLRLLGAKNVSYLVPDRVVDGYGLTPPI
AERVAASGADMLITVDNGIASVEGVAAAKARGLQVLVTDHHLPGPELPLADVLVNPNQPG
CEFESKSIAGVGVMFYVLLALRSELRRRGVFDTPAPAAGPPQGGPASPSGGGEAHEMASR
GAGKPQPKLDALLPLVALGTVADVVKLDANNRRLVAQGLRRIRAGAMPAGVAALFKAAGR
NASAATTFDFGFALGPRINAAGRLADMTLGIECLLTDDAGRAEELARMLDGINRERRDIE
GGMRDQALLLAESLFSTGADGEGIAAPPPAISVFDAAFHEGVVGIVASRIKDRFHRPTFV
FAASGAPGKEQELKGSGRSIPGFHLRDALDLVAKRHPGVLLRFGGHAMAAGCTVAREHFE
TFEKGFAQVARELLADAALTRQIETDGPIAREYMRIDLVDTLHREVWGQGFAPPTFSEEV
EVVSQRLVGEKHLSLKLRHQGQPIDAIWFSHTEPLPPRVKLAFRLDADEWQGVRRLRFLV
EGAEF
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
gtgaagatcgtcgaccgcgagatccctccgcgcaccgtctgggcgctggagcaggccggc
gtgcacccgctgctggcccgcctgttcgcagcgcgcggcgtgcgcgccaaggacgaactc
gacgacggcctcgcccgactgctgccgccggacaccctgcgcggcacgcaacaagccgcc
gtgctgctggccaacgccatcgcgcaggacaagcgcctgtgcatcgtggccgactacgac
tgcgacggcgccaccgcctgcgcggtcggcgtgcgcggcctgcgcctgctgggcgccaaa
aacgtgagctacctcgtgcccgaccgcgtggtcgacggctacggactcacgccgcccatc
gccgagcgcgtggccgcgagcggcgccgacatgctgatcaccgtcgacaacggcatcgcc
agcgtcgaaggcgtggccgccgccaaggcgcgcggcctgcaggtgctggtgaccgaccac
cacctgccgggcccggagcttcccctggccgacgtgctggtcaacccgaaccagcccggc
tgcgagttcgagagcaagagcatcgcgggcgtcggcgtgatgttctacgtgctgctggcg
ctgcgctccgagctgcgcaggcgcggcgtgttcgacacgcctgcgcccgccgccgggccg
ccccaaggcgggccagcctccccctcggggggtggcgaagcacatgaaatggcaagccgg
ggggcaggcaaaccccagcccaagctcgatgcgctgctgccgctggtcgcgctcggcacc
gtggccgacgtggtgaagctcgacgccaacaaccgccgcctcgtggcgcagggcctgcgc
cgcatccgcgccggcgcaatgcccgccggcgtggccgcgctgttcaaggcggcgggccgc
aatgcttctgcggccaccaccttcgacttcggtttcgcgctgggcccgcgcatcaacgcg
gccggccggctggccgacatgacgctgggcatcgaatgcctgctgaccgacgacgccggc
cgcgccgaggagctcgcgcgcatgctcgacggcatcaaccgcgagcggcgcgacatcgaa
ggcggcatgcgcgaccaggcactgctgctggccgagtcgctgttttccaccggcgccgac
ggcgagggcatcgcggcgccgccgccggccatcagcgtgttcgacgcggccttccacgaa
ggcgtggtgggcatcgtggcctcgcgcatcaaggaccgcttccaccgcccaaccttcgtc
ttcgccgcgagcggcgcgccgggcaaggagcaggagctcaagggctcgggccgctcgatc
ccgggcttccacctgcgcgacgcgctcgacctcgtggccaagcgccatccgggcgtgctg
ctgcgcttcggcggccacgcgatggcggccggctgcacggtggcgcgcgagcacttcgag
actttcgaaaaaggcttcgcacaggtcgcccgggagctgctggccgacgccgcgctcacc
cggcagatcgagaccgacgggccgatcgcgcgcgagtacatgcgcatcgatctcgtcgac
acgctgcaccgcgaggtctggggccagggcttcgcgccgcccaccttcagcgaggaggtc
gaggtggtgtcgcagcggctggtgggcgagaagcacctgtcgctcaagctcaggcaccag
ggccagccgatcgacgccatctggttcagccacaccgagccgctgccgcccagggtcaag
ctggcgttccggctcgacgcggacgaatggcagggcgtgcgccggctgcgcttcctggtg
gaaggcgcggagttctag
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