Variovorax sp. PMC12: C4F17_13385
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Entry
C4F17_13385 CDS
T05380
Name
(GenBank) penicillin-binding protein
KO
K05366
penicillin-binding protein 1A [EC:
2.4.99.28
3.4.16.4
]
Organism
vam
Variovorax sp. PMC12
Pathway
vam00550
Peptidoglycan biosynthesis
vam01100
Metabolic pathways
vam01501
beta-Lactam resistance
Brite
KEGG Orthology (KO) [BR:
vam00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
C4F17_13385
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
C4F17_13385
09180 Brite Hierarchies
09181 Protein families: metabolism
01003 Glycosyltransferases [BR:
vam01003
]
C4F17_13385
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
vam01011
]
C4F17_13385
Enzymes [BR:
vam01000
]
2. Transferases
2.4 Glycosyltransferases
2.4.99 Transferring other glycosyl groups
2.4.99.28 peptidoglycan glycosyltransferase
C4F17_13385
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
C4F17_13385
Glycosyltransferases [BR:
vam01003
]
Polysaccharide
Bacterial polysaccharide (excluding LPS)
C4F17_13385
Peptidoglycan biosynthesis and degradation proteins [BR:
vam01011
]
Peptidoglycan biosynthesis and degradation
Glycosyltransferase/DD-Transpeptidase (Class A PBP)
C4F17_13385
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Transgly
Transpeptidase
PCB_OB
RhodobacterPufX
Motif
Other DBs
NCBI-ProteinID:
AVQ81868
LinkDB
All DBs
Position
1:2848704..2851115
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AA seq
803 aa
AA seq
DB search
MQEKTSSPTGPAKTPPPKRPAWLRWLLRLFFWGFGIAAAGVLSVLCVVAVALAVAYPNLP
DISELSDYRPKLPLRVFSAEGTLIGEFGEERRNLTPISAIPKVVKDAVLAAEDSRFYDHG
GVDYKGMVRAGLANLNRVKSQGASTITMQVARNVYLSSEKTLTRKVYEVLLTFKLEHLLT
KDQIFEIYLNQIYLGNRAYGFAAASEAYFGKPLQELTIAQAAMLAGLPKAPGANNPVNNP
QRARGRQFYVIDRMQEAGFITAEQAAEAKKEELHLRDAADPNRLHAEYVAETVRQLMYAQ
YGDSTYTRGLKVYTSLVAADQAAAYKALRKGIMDYERRQIYRGPEKFVDLPADAKDLDEA
VDDALSDHPDNGDVMAAVVLKATPKQIDAVRANGDAVQITGEGLKPAQSGLSDKAPPNIK
IRRGAVIRVVKTPKNTWEITQLPEVEGAFVAMDPRDGAIKALVGGFDFGKNKFNHVTQAW
RQPGSSFKPFIYSAALEKGFTPATVINDGPLFFDAGTTGGQPWEPKNYGGGYDGPMSMRT
ALMKSKNLVSIRILQSIGTRYAQEWITNFGFDKDKHPAYLPMALGAGSVTPMQMAVGYSV
FANGGYRVNPYLVTRITDHKDKVLVDKQPPLLNESLRAIPQRNAFIMDTLLQSVARAGTA
AKAQAMLKRPDLYGKTGTTNDSLDAWFAGFQPTMTAISWIGYDTPRNLGDRETGGGLSLP
IWINYMETAIKGVPVTDIATAPPSGIVNVGGEWYYDDYAPGRGVASLGVEAAPVAPVEAL
TGAPVSPPAPPEERSRILDLFRN
NT seq
2412 nt
NT seq
+upstream
nt +downstream
nt
atgcaagaaaaaacttcaagccccacagggccagccaagacccctccccccaaacgccca
gcctggctgagatggctgctgcgcctgttcttctggggattcggcattgccgcggccggc
gtgctgtcggtcctgtgcgtggtggcggtggccctggcggtcgcgtatcccaacctgccg
gacatcagcgagctgtcggactatcggcccaagctgccgctgcgggtgttctcggcggaa
ggcacgctgatcggggaattcggggaagagcgccgcaacctgacgcccatctccgccatt
cccaaggtcgtgaaagacgccgtgctggccgccgaagactcgcgcttctatgaccacggc
ggcgtggactacaagggcatggtgcgcgccggcctggccaacctgaaccgggtgaagagc
cagggcgcatcgaccatcaccatgcaggtcgcgcgcaacgtctacctgagctccgaaaag
acgctgacccgcaaggtctacgaagtgctcctgaccttcaagctggagcacctgctgacc
aaggaccagatcttcgagatctacctgaaccagatctacctcggcaaccgcgcctatggc
tttgccgccgcgtccgaagcgtatttcggcaagcccctgcaggaactcacgatcgcccag
gccgccatgctggccggcctgccgaaggcgcctggcgcgaacaacccggtgaacaacccg
cagcgcgcgcgcggccgtcagttctacgtgatcgaccgcatgcaggaggccggcttcatc
accgccgaacaggcggccgaggccaagaaggaagagctgcacctgcgcgacgccgccgac
ccgaaccgcctgcatgccgaatacgtggcagagacggtgcgccagctgatgtacgcgcaa
tacggcgacagcacctacacgcgcggcctcaaggtctacacctcgctggtggcggccgac
caggctgccgcctacaaggcgctgcgcaagggcatcatggattacgagcgccgccagatc
tatcgcggacccgagaagttcgtcgacctgcccgccgacgccaaggacctcgacgaagcg
gtggacgacgcgctcagcgaccaccccgacaacggcgacgtgatggccgccgtggtgctc
aaggccacgcccaagcagatcgacgcggtgcgcgccaacggcgacgcagtgcagatcacc
ggcgaagggctcaagcccgcgcagtccggcctctccgacaaggcgccgcccaacatcaag
atccgtcgcggcgcggtcatccgcgtggtgaagacgcccaagaacacctgggaaatcacc
cagctgcccgaagtggaaggcgccttcgtcgccatggatccgcgcgacggcgccatcaag
gcgctggtcggcggcttcgatttcggcaagaacaagttcaaccacgtgacccaggcctgg
cgccagccgggttcgagcttcaagccgttcatctattcggcggcgctcgaaaagggcttc
acccccgccaccgtcatcaacgacggcccgctgttcttcgacgcgggcaccaccggcggc
cagccctgggagcccaagaactacggcggcggctacgacggcccgatgtcgatgcgcacc
gcgctcatgaagtcgaagaacctcgtgtcgatccgcatcctgcagtccatcggcacgcgc
tacgcccaggagtggatcaccaacttcggcttcgacaaggacaagcaccccgcctacctg
ccgatggcgctgggcgcgggctcggtcacgccgatgcagatggcggtgggctactcggtg
ttcgccaacggcggctaccgcgtcaacccctacctcgtgacccgcatcaccgaccacaag
gacaaggtgctggtcgacaagcagccgccgctgctcaacgagtcgctgcgcgccattcca
cagcgcaatgcattcatcatggacacgctgctgcagtcggtggcgcgcgccggcaccgcc
gccaaggcgcaggccatgctcaagcggcccgacctctacggcaagaccggcaccaccaac
gactccctcgacgcctggttcgccggcttccagccgaccatgaccgccatctcgtggatc
ggctacgacacgccccgcaacctgggcgaccgcgagactggcggaggcctgagcctgccg
atctggatcaactacatggaaaccgccatcaagggcgtgccggtgaccgacatcgcgacg
gcaccgccctccggcatcgtgaacgtgggtggcgagtggtactacgacgactacgcaccg
ggacgtggcgtggcatcgctcggcgtggaagccgcgcccgtggcaccggtcgaagccctg
accggcgcgccggtcagcccgccggccccgcccgaggaacgcagccgcatcctcgatctc
ttcaggaactga
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