Variovorax sp. PMC12: C4F17_13550
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Entry
C4F17_13550 CDS
T05380
Symbol
groL
Name
(GenBank) chaperonin GroEL
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
vam
Variovorax sp. PMC12
Pathway
vam03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vam00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C4F17_13550 (groL)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vam03019
]
C4F17_13550 (groL)
03110 Chaperones and folding catalysts [BR:
vam03110
]
C4F17_13550 (groL)
03029 Mitochondrial biogenesis [BR:
vam03029
]
C4F17_13550 (groL)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
vam04147
]
C4F17_13550 (groL)
Enzymes [BR:
vam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
C4F17_13550 (groL)
Messenger RNA biogenesis [BR:
vam03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
C4F17_13550 (groL)
Chaperones and folding catalysts [BR:
vam03110
]
Heat shock proteins
HSP60 / Chaperonin
C4F17_13550 (groL)
Mitochondrial biogenesis [BR:
vam03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
C4F17_13550 (groL)
Exosome [BR:
vam04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
C4F17_13550 (groL)
Exosomal proteins of other body fluids (saliva and urine)
C4F17_13550 (groL)
Exosomal proteins of breast cancer cells
C4F17_13550 (groL)
Exosomal proteins of colorectal cancer cells
C4F17_13550 (groL)
Exosomal proteins of bladder cancer cells
C4F17_13550 (groL)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
Motif
Other DBs
NCBI-ProteinID:
AVQ81900
LinkDB
All DBs
Position
1:2888310..2889962
Genome browser
AA seq
550 aa
AA seq
DB search
MAAKDVVFGGEARARMVEGVNILANAVKVTLGPKGRNVVLERSFGAPTVTKDGVSVAKEI
ELKDKLQNMGAQLVKEVASKTSDNAGDGTTTATVLAQAIVREGFKYVAAGINPMDLKRGI
DKAVTALVEELKKASKPTTTSKEIAQVGSISANSDETIGKLIADAMDKVGKEGVITVEDG
KSLESELDVVEGMQFDRGYLSPYFINNPEKQSALLDNPFVLLFDKKISNIRDLLPTLEQV
AKAGRPLLIIAEEVEGEALATLVVNTIRGILKVVAVKAPGFGDRRKAMLEDIAILTGGKV
IAEEVGLTLEKVTLADLGQAKRIEVGKENTIIIDGAGAAADIEARVKQVRVQIEEATSDY
DREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALL
RAKQAVGDRVKGDNADQDAGIKLVLKAIEAPLREIVNNAGGEASVVVNAVLAGKGNYGFN
AANDTYGDMLELGILDPTKVTRTALQNAASVSSLLLTTEAMVADAPKDDAPAGGGMPDMG
GMGGMGGMGM
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
atggcagcaaaagacgtagtcttcggcggtgaagcccgcgcacgcatggtcgagggtgtg
aacatcctggccaacgcagtcaaggtcaccctgggccccaagggccgcaacgtggtgctc
gagcgctcgttcggcgcccccaccgtcaccaaggacggtgtgtcggtcgccaaggaaatc
gaactcaaggacaagctgcagaacatgggcgcccagctcgtgaaggaagtggcctccaag
accagcgacaacgctggtgacggcaccacgaccgctaccgtgctggctcaagccatcgtt
cgcgaaggcttcaagtacgtggccgcaggcatcaacccgatggacctgaagcgcggcatc
gacaaggccgtgacggccctggtcgaagagctgaagaaggcttcgaagcccaccaccacg
tcgaaggaaatcgctcaagtcggctcgatctcggccaacagcgacgaaaccatcggcaag
ctcatcgccgacgcgatggacaaggtcggcaaggaaggcgtgatcaccgtcgaagacggc
aagtcgctcgaaagcgaactggacgtcgtcgaaggcatgcagttcgaccgcggctacctg
tcgccctacttcatcaacaaccccgagaagcaatcggcgctgttggacaaccccttcgtg
ctgctgttcgacaagaagatcagcaacatccgtgacctgctccccacgctggaacaagtc
gccaaggccggccgtccgctgctgatcattgccgaagaagtcgaaggcgaagccctggct
acgctggtcgtgaacacgatccgcggcatcctgaaggtcgtggccgtcaaggctcctggc
ttcggcgaccgccgcaaggccatgctggaagacatcgccatcctgacgggcggcaaggtc
atcgctgaagaagtgggcctgacgctcgaaaaggtgacgctggccgacctgggccaggcc
aagcgcatcgaagtgggcaaggaaaacaccatcatcatcgacggcgccggcgctgctgcc
gacatcgaagcccgcgtgaagcaagtgcgcgtgcagatcgaagaagccacgagcgactac
gaccgtgaaaagctgcaagagcgcgtggccaagctggccggcggtgttgccgtgatcaag
gtcggcgccgccaccgaagtcgaaatgaaggaaaagaaggctcgcgtcgaagacgccctg
cacgctacccgcgccgcagtggaagaaggcgtggttgctggtggcggcgtggctctgctg
cgtgccaagcaagccgtgggcgaccgcgtcaagggcgacaacgccgaccaggacgccggc
atcaagctggtgctgaaggccatcgaagcccccctgcgcgaaatcgtgaacaacgccggc
ggcgaagcctcggtggtggtgaacgcggttctggccggcaagggcaactacggcttcaat
gccgccaacgacacgtacggcgacatgctcgagctgggcatcctggacccgacgaaggtc
acccgcaccgcactgcagaacgccgcttcggtgtcctcgctgctgctgacgaccgaagcc
atggtggctgacgctccgaaggacgacgctcctgccggcggcggcatgcccgacatgggt
ggcatgggcggcatgggcggcatgggcatgtaa
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