KEGG   Variovorax sp. PMC12: C4F17_13790
Entry
C4F17_13790       CDS       T05380                                 
Symbol
gspD
Name
(GenBank) type II secretion system protein GspD
  KO
K02453  general secretion pathway protein D
Organism
vam  Variovorax sp. PMC12
Pathway
vam03070  Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:vam00001]
 09130 Environmental Information Processing
  09131 Membrane transport
   03070 Bacterial secretion system
    C4F17_13790 (gspD)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:vam02044]
    C4F17_13790 (gspD)
Secretion system [BR:vam02044]
 Type II secretion system
  General secretion pathway protein
   C4F17_13790 (gspD)
SSDB
Motif
Pfam: Secretin Secretin_N type_II_gspD_N0 DUF1180
Other DBs
NCBI-ProteinID: AVQ81943
LinkDB
Position
1:2940418..2942721
AA seq 767 aa
MMKPLFSTGTVALAVRVLIAATFLQAAPAAFAQAGDAPRRGEPITLNFANADIEAVARTM
AVVTGRDVVVDPRVKGTMNLVTDRAIQPAAAFNQFASALRLQGFAVVEADGLYKVVPEAD
AKLQSSAVNTSIGAVSSSGSNQIVTQIFRLNYESPNSLLPVLRPLIPPNNTINVNPGNNS
LVITDYADNMRRLARIIASLDVPNASDVEVIQLKHSVATDMVPLLTRLVDGSGSGAPGAA
AAPGAADASFRTTLLADPRSNALILRAANPARVQLVRTLVEKLDRPAAESSNGAAGNIYV
VYLKNADAVRLAATLRAAMAANQQSGTPGQPGATGGSSVPQQSAPQAMQVNLNSGGGQNG
SSPAASAPLNNANQPSTGGQIQADPSTNSLIITAPEPQYRQMRAVIDRLDGRRAQVMIEA
LIVEVGDTAAAKFGVQWQSALGNNAVLGTNSSVAGANLLTLTQALATKNPANLNLTSGLN
LGIAGKIGGQYILGAIASFFDSDKDSNVLSKPNLLTLDNEEAKIVIGQNVPFVTGQYAST
SGSVGVNPFTTVERKDVGLTLRVRPTINENGTVKLTIFQETSTVDPNTVNNPNGPTTSKR
SIESSVLVEDGGLVMLGGLLSDTYNNTVEKVPVAGDIPVLGNLFKSQARTREKLNLMMFL
RPAVMRDAVSTEAFAYDRYDEIRGMQQRSQPDTSNVMLRGVDGANVLPELAPPARAAEPP
RRVESRIEGTQLIPPPRPAADNRRLAPSPLRGTLPPTADPATARELP
NT seq 2304 nt   +upstreamnt  +downstreamnt
atgatgaagccactgttttcgaccggcaccgtcgcgctcgccgtgcgcgtgctgatcgcg
gccacgttcctgcaggccgcgcccgcggccttcgcgcaggcgggcgacgcgccgcgccgc
ggcgagccgatcacgctcaacttcgccaatgccgacatcgaggccgtggcccgcaccatg
gccgtggtcacgggccgcgacgtggtggtcgatccgcgcgtcaagggcaccatgaacctc
gtcaccgaccgcgccatccagccggcggctgcgttcaaccagttcgcctcggcgctgcgc
ctgcagggcttcgcggtggtggaggccgacggcctctacaaggtggtgcccgaggccgac
gccaagcttcagagcagcgccgtcaacacctccatcggcgccgtctcgtccagcggcagc
aaccagatcgtcacgcagatcttccggctcaactacgagtcgccgaacagcctgctgccg
gtgctgcgcccgctgataccgccgaacaacaccatcaacgtgaatccgggcaacaactcg
ctcgtgatcaccgactacgccgacaacatgcgccggctggcccgcatcatcgcgtcgctc
gacgtgcccaacgcgtccgacgtcgaggtcatccagctcaagcactcggtcgccaccgac
atggtgccgctgctcacgcggctggtcgacggcagcggctcgggcgcaccgggcgcggcc
gccgccccgggtgccgccgatgcatcgttccgcaccacgctgctggccgatccgcgcagc
aatgcgctgatcctgcgcgcagccaacccggcgcgcgtgcagctggtgcgcacgctggtc
gagaagctcgaccggcccgccgccgaaagcagcaacggcgcggccggcaacatctacgtg
gtctatctgaagaacgccgatgcggtgcgcctcgcggccacgctgcgcgcggccatggcc
gccaaccagcagtccggcaccccgggtcagcccggcgcgacgggcggcagctcggtgccg
cagcagagcgcgccgcaggccatgcaggtgaacctgaacagcggcggcggccagaacggc
agctcgcccgccgccagcgcaccgctcaacaacgccaaccagccctcgaccggcggccag
atccaggccgatccgtcgaccaattcgctcatcatcaccgcgcccgagccgcagtaccgc
cagatgcgcgccgtgatcgaccggctcgacggccgccgcgcgcaggtcatgatcgaggcg
ctgatcgtcgaagtgggcgacaccgccgccgcgaagttcggcgtgcagtggcagagcgcg
ctgggcaacaacgccgtgctcggcaccaactcgtcggtggcgggtgccaacctgctgacg
ctgacgcaggcgctggccaccaagaacccggccaacctcaacctgacctcggggctgaac
ctgggcattgccggcaagatcggcggccagtacatcctgggcgcgattgccagcttcttc
gacagcgacaaggactccaacgtgctgtccaagcccaacctgctgacgctggacaacgaa
gaggccaagatcgtgatcggccagaacgtgcccttcgtcaccggccagtacgcgagcacc
tcgggctccgtgggcgtcaacccgttcaccaccgtcgagcgcaaggacgtcggcctgacg
ctgcgcgtgcgcccgaccatcaacgagaacggcacggtgaagctgacgatcttccaggag
acctccacggtcgacccgaacaccgtcaacaacccgaacggccccaccaccagcaagcgc
tcgatcgaatcgagcgtgctggtggaagacggcggcctcgtcatgctcggcggcctgctg
tcggacacctacaacaacacggtcgagaaggtgccggtggccggcgacattcccgtgctc
ggcaacctgttcaagagccaggcgcgcacgcgcgagaagctcaacctcatgatgttcctg
cgcccggcggtgatgcgcgatgccgtttccaccgaggccttcgcctacgaccgctacgac
gagatccgcggcatgcagcagcgctcgcagcccgacacctccaacgtgatgctgcgcggc
gtcgacggcgcgaacgtgctgcccgagcttgccccgccggcgcgcgcggcggagccgccc
cggcgcgtcgagtcgcgcatcgaaggcacccagctcattccgccgccgcgcccggctgcg
gacaaccgccggctggctccgagcccgctgcgcggcacgctgccgcccacggccgacccc
gccacggcgcgcgaactgccctga

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