KEGG   Variovorax sp. PMC12: C4F17_14370
Entry
C4F17_14370       CDS       T05380                                 
Name
(GenBank) signal recognition particle protein
  KO
K03106  signal recognition particle subunit SRP54 [EC:3.6.5.4]
Organism
vam  Variovorax sp. PMC12
Pathway
vam02024  Quorum sensing
vam03060  Protein export
vam03070  Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:vam00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03060 Protein export
    C4F17_14370
 09130 Environmental Information Processing
  09131 Membrane transport
   03070 Bacterial secretion system
    C4F17_14370
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    C4F17_14370
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:vam02044]
    C4F17_14370
Enzymes [BR:vam01000]
 3. Hydrolases
  3.6  Acting on acid anhydrides
   3.6.5  Acting on GTP to facilitate cellular and subcellular movement
    3.6.5.4  signal-recognition-particle GTPase
     C4F17_14370
Secretion system [BR:vam02044]
 Sec (secretion) system
  Prokaryotic Sec-SRP core components
   C4F17_14370
  Eukaryotic Sec-SRP protein
   C4F17_14370
SSDB
Motif
Pfam: SRP54 SRP_SPB SRP54_N Zeta_toxin CbiA APS_kinase cobW AAA_22 AAA_33 AAA_30 AAA_16 AAA_24 nSTAND3 AAA_31 AAA_19 AAA_17 AAA_28 AAA_18 AAA_14 Thymidylate_kin ATPase ResIII T2SSE DO-GTPase1 AAA_26 YqeC TsaE ArsA_ATPase Helicase_RecD KTI12 Rad17
Other DBs
NCBI-ProteinID: AVQ82048
LinkDB
Position
1:complement(3076723..3078111)
AA seq 462 aa
MATALTEKFSRLVKTMSGQARITESNVQDMLREVRMALLEADVALPVVRDFVARVKEKAL
GQEVLGSLKPGQALVGIVNRELAATMGEGVSDINLAAQPPAVILMAGLQGAGKTTTTAKL
AKHLIEKRKKKVLTVSGDVYRPAAIEQLKTVTKQAGAEWFPSTPDQKPLDIARAALDHAK
RHYFDVLLVDTAGRLAIDEVLMAEIKQLHAALDPVETLFVVDAMQGQDAINTAKAFKEAL
PLTGIILTKTDGDSRGGAALSVRQVTGVPIKFAGVSEKIDGLEVFDAERHAGRILGMGDI
VALVEQVTAGVDVAAAQKLAAKVKSGAGFDLNDFLGQLQQMKQMGGLSSLMDKLPAQMAA
KATEADMTRAERDIRRKEGIINSMTPLERRKPELLKATRKRRIAAGAGVQVQEVNRLLNE
FEQMQGMMKKMKGGGLMKMMKRMGGMKGMGGMGGPGGPKLPF
NT seq 1389 nt   +upstreamnt  +downstreamnt
atggccaccgccctcacagaaaagttctcccgcctcgtcaagacgatgagcggccaggcg
cgcatcaccgaaagcaacgtgcaggacatgctgcgcgaagtgcgcatggcgctgctggaa
gccgacgtggcgctgcccgtggtgcgcgacttcgtcgcccgcgtgaaggaaaaggcgctc
ggccaggaagtgctgggttcgctcaagccgggccaggcgctggtcggcatcgtcaaccgc
gagcttgccgccaccatgggcgagggcgtgtccgacatcaacctcgcggcccagccgccg
gcggtgatcctcatggccggcctgcagggcgccggcaagacgaccaccaccgccaagctg
gccaagcacctgatcgagaagcgcaagaagaaggtgctcaccgtgtcgggcgacgtgtat
cgccccgccgccatcgagcagctcaagaccgtgaccaagcaggccggcgccgagtggttc
ccgagcacgcccgaccagaagccgctggacatcgcgcgcgccgcgctcgaccacgccaag
cgccactatttcgacgtgctgctggtcgacacggccggccgcctggccatcgacgaagtg
ctgatggccgaaatcaagcagctgcacgcggcgctcgacccggtcgaaaccctgttcgtg
gttgacgccatgcagggccaggacgcgatcaacaccgccaaggccttcaaggaggcgctg
ccgctcaccggcatcatcctgaccaagaccgacggcgattcgcgcggcggtgcggcgctg
tcggtgcgccaggtcacgggcgtgccgatcaagttcgccggcgtgagcgagaagatcgac
ggcctggaagtgttcgacgccgagcgccacgcgggccgcatcctgggcatgggcgacatc
gtcgcgctggtcgagcaggtcacggccggcgtggacgtggcggcggcgcagaagctcgcg
gccaaggtcaagagcggcgcgggcttcgacctgaacgacttcctcggccagctgcagcag
atgaagcagatgggcggcctctccagcctgatggacaagctgcccgcgcagatggccgcc
aaggccaccgaagccgacatgacccgcgccgagcgcgacatccgccgcaaggaaggcatc
atcaacagcatgacgccgctggagcgccgcaagcccgagctgctgaaggccacacgcaag
cgccgcatcgccgccggtgccggcgtgcaggtccaggaagtgaaccgcctgctcaacgag
ttcgagcagatgcagggaatgatgaagaagatgaagggcggcggcctcatgaagatgatg
aagcgcatgggcggcatgaagggcatgggcgggatgggtggtcccggcgggccgaagctg
ccgttctga

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