Variovorax sp. PMC12: C4F17_14495
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Entry
C4F17_14495 CDS
T05380
Name
(GenBank) ribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
vam
Variovorax sp. PMC12
Brite
KEGG Orthology (KO) [BR:
vam00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vam03016
]
C4F17_14495
Enzymes [BR:
vam01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
C4F17_14495
Transfer RNA biogenesis [BR:
vam03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
C4F17_14495
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
WHD_RNase_II
Motif
Other DBs
NCBI-ProteinID:
AVQ82073
LinkDB
All DBs
Position
1:3105555..3107612
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AA seq
685 aa
AA seq
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MFVLFEEAGKYLGGRVLSEAEASAQVELDTGKRVKVKGANIVLRFEKPAPAELIAEARTL
AATIDLDLAWEFAAEGEFGFGELAADYFSDKPSLAQQAAALFALFEAPHYFRRAGKGRFK
KAPAEIVQQALAAIEKKKAVQAQITEWAGQLAEGVCPAPVREQLYKILFKPDKNAPEYKA
VVDAARATQRPPLDLLERAGAIDSPYQFHWRRFLFENFPKGTGFPALAAPAIVDDLPVAS
GVQAFSIDDSQTTEIDDALSVQGLGSGTVTVGIHIAAPALALTPGSAIDNVARARMSTVY
MPGYKITMLPDDVVNTYTLLEGGDRPAVSLYARFDEATLELQGTETRLERVPIVANLRHD
QLDTVVTHPWLEDASFQSDNTPEAAATLRAPLSFLFRLAKQLKAQREVVRGKPENFNRPD
YNFRLVGNEGNEPTGNEQVQISTRQRGAPLDLIVSEAMILANSSWGGWLGELGVPGLYRS
QASLAPGIKVRMGTRALPHAGLGVKSYAWSTSPLRRYTDLVNQWQIIAAARHGKTAALAA
PFKPKDADLFSILSGFDAAYATYNAYQGGMERFWTLKYLQQQGITELEATVIKDLPNGAL
VRAETLPLVFPVAGQQERGARLRVKLGEIDEIALDVTGTVLERLDTPKADAAADEESDEE
EVVAGPIAIAVDLTDSEAAPENTPA
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atgtttgtattgtttgaagaagccggcaagtacctcggcggccgcgtgctgtcggaggcc
gaagcatcggcacaggtcgagctcgacaccggcaagcgcgtcaaggtcaagggcgccaac
atcgtgctgcgtttcgagaagcccgcgcccgccgagctgatcgccgaggcgcgcacgctc
gccgccaccatcgacctcgacctcgcctgggaattcgcggccgaaggcgaattcggcttc
ggcgaactcgcagccgactatttcagcgacaagccctcgctcgcgcagcaggccgcggcg
ctgttcgcgctgttcgaggcgccgcactacttccgccgcgccggcaagggccgcttcaag
aaggcgcccgccgaaatcgtgcagcaggcgctggccgccatcgagaagaagaaggccgtc
caggcgcagatcaccgagtgggccggacagctggccgagggcgtttgccccgcgccggtg
cgcgagcagctctacaagatcctgttcaagcccgacaagaacgcacccgaatacaaggcc
gtggtcgacgcggcgcgcgccacgcagcgcccgccgctcgacctgttggagcgtgccggc
gccatcgattcgccctaccagttccactggcggcgcttcctgttcgagaacttccccaag
ggcaccggctttcccgcactcgcggcgcccgccatcgtggacgacctgcccgtggcgtcc
ggcgtgcaggctttctcgatcgacgattcgcagaccaccgaaatcgacgatgcgctctcg
gtgcagggcctgggcagcggcaccgtcaccgtgggcatccacatcgcggcgccggcactc
gcactgacgccgggcagcgccatcgacaacgtggcgcgcgcgcgcatgtcgacggtctac
atgcccggctacaagatcacgatgctgcccgatgacgtggtcaacacctacacgctgctc
gaaggcggcgaccgcccggcggtgtcgctctatgcgcgcttcgacgaagccacgctggag
ctgcaaggcaccgagaccaggctggagcgcgtgcccatcgtcgccaacctgcgccacgac
cagctcgacaccgtcgtcacccatccctggctcgaagacgcctcgttccagagcgacaac
acgcccgaagccgcggccacgctgcgcgccccgctctccttcctgttccgcctcgcgaag
cagctgaaggcgcagcgcgaagtggtgcgcggcaagccggagaacttcaaccggcccgac
tacaacttccgcctcgtcggcaacgagggcaacgagcccaccggcaacgagcaggtgcag
atcagcacgcgccagcgcggcgcgccgctcgacctgatcgtgtccgaagccatgatcctg
gccaacagcagctggggcggctggctcggcgaactcggcgtgcccgggctgtaccgcagc
caggccagcctcgcgccgggcatcaaggtgcgcatgggcacgcgcgcgctgccgcacgcg
ggcctgggcgtgaagagctacgcctggagcacctcgccgctgcgccgctacaccgacctg
gtgaaccagtggcagatcattgccgccgcgcgccacggcaagaccgccgcgctggccgcg
cccttcaagccgaaggacgccgacctgttctccattctctcgggcttcgacgcggcctat
gccacgtacaacgcctaccagggcggcatggaacgcttctggacgctgaagtacctgcag
cagcagggcatcaccgagctcgaagccaccgtcatcaaggacctgcccaacggcgcgctg
gtgcgtgccgagacgctgccgctggtgttccccgtggccggccagcaggagcgcggggcg
cgcctgcgcgtgaagctcggcgaaatcgacgagatcgcgctcgacgtgacgggcaccgtg
ctcgagcgcctcgacacgccgaaggccgatgcggccgccgacgaggaaagcgacgaagaa
gaagtggttgcaggcccgatcgccatcgcggtcgacctgacggacagcgaggccgcgccc
gagaacacgcccgcatga
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