Variovorax sp. PMC12: C4F17_14585
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Entry
C4F17_14585 CDS
T05380
Name
(GenBank) UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
KO
K01925
UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:
6.3.2.9
]
Organism
vam
Variovorax sp. PMC12
Pathway
vam00470
D-Amino acid metabolism
vam00550
Peptidoglycan biosynthesis
vam01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
vam00001
]
09100 Metabolism
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
C4F17_14585
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
C4F17_14585
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
vam01011
]
C4F17_14585
Enzymes [BR:
vam01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.9 UDP-N-acetylmuramoyl-L-alanine---D-glutamate ligase
C4F17_14585
Peptidoglycan biosynthesis and degradation proteins [BR:
vam01011
]
Precursor biosynthesis
Amino acid ligase
C4F17_14585
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Mur_ligase_M
Mur_ligase_C
MurD-like_N
Sacchrp_dh_NADP
AlaDh_PNT_C
NAD_binding_8
2-Hacid_dh_C
Motif
Other DBs
NCBI-ProteinID:
AVQ82090
LinkDB
All DBs
Position
1:complement(3125200..3127269)
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AA seq
689 aa
AA seq
DB search
MRHLKDLHVLILGLGASGLAMARWCARHGAVVTVADTREAPASLATLKAEWPEVAFVGGP
FTAALVEGTPIRAVYRSPGLSPATIAPVADAARAMGLPVGGELDLFARALLDLRTVEVPV
AEAEPEPEAVPEAPVEAAEPQPQAELPLEEPAPAEPADAVAEPVQQPEPAPEPEPEPEPI
VPAQAEAMPRDPSLSVAVPQPPEADAPAAAPEASAETVETAAAELPVAIPAPAPATVSRL
PATGKPYVPTAAKEAAEFVAKIAELSATNPASAAVEEESPQLELAPPVEPEAPKGYTPAV
LAITGTNGKTTVTSLTGQLVERAGKTVAVAGNIGPTLLDTLWARIDAGTLPDVWVLELSS
FQLDGVQDFEPTAATVLNLTQDHLDWHGDMPAYAAAKARIFGARGLMILNRDDAGVMAML
PAPVKVKLQRPQIRAHVTFGAAMPLRPGDYGIERVNGMAWLVRALEADETQKRKRGAVVE
EEIFLQRLMPADALRIRGRHNAMNALAALALASAAGCPLGPMLYGLREYHGEPHRVEPIA
IVDEVEYFDDSKGTNVGATVAALAGLGEERRVVVILGGEGKGQDFEPLAAPVRQYARAVV
LIGRDAPIIEAALASTGVSLMHAGSMDEAVQAAAARANPGDAVLLSPACASFDMFRDYEH
RADVFREAVLAWADSPRGLGDSSTTEEQL
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atgcggcacctgaaagacctccacgttctcatcctcggcctcggcgcgtccgggctggcg
atggcgcgctggtgcgcgcggcacggcgccgtcgtgaccgtggccgacacccgcgaggcg
cccgcctcgctggcgacgctgaaggcggaatggcccgaggttgctttcgtcggcggtccg
ttcacggccgcgctggtcgaaggcacgccgatccgcgcggtctatcgctcgccggggctg
tcgcccgcgaccatcgcgccggtggccgatgccgcacgcgccatgggcctgccggtcggc
ggcgaactcgacctgttcgcgcgcgcgctgctggacctgcggacggtcgaggtgcctgtg
gcggaagccgagcccgaacccgaagccgtgcccgaagcgcccgtggaagccgccgagccg
cagccgcaggcagagctgccgctggaagagccggcgcccgccgagccggcagatgccgtg
gcagagcctgtgcagcagcccgaacccgcgccggagccagagccggagcccgagccgatc
gttcccgcgcaagccgaggccatgccgcgcgatccttcgctcagcgttgccgtgccgcag
cctccggaagccgacgcacctgctgccgcccctgaggcaagcgcagaaactgtcgaaact
gctgccgccgagcttcccgtcgccatcccggcgccggcgcccgccaccgtttcccgcctg
cccgccaccggcaagccttacgttcccacggccgccaaggaagccgcggagttcgtcgcc
aagatcgccgagctttccgccaccaacccggcctccgccgccgtcgaggaagaatcgccg
cagctcgaactggccccgccggtcgagcccgaggcgcccaagggctacacgcccgcggtg
ctcgccatcaccggcaccaacggcaagaccaccgtcacctcgctcaccggccaactggtc
gagcgcgcgggcaagaccgtggccgtggccggcaacatcggcccgacgctgctcgacacg
ctctgggcccgcatcgacgccggcacgctgcccgacgtgtgggtgctcgagctctccagc
ttccagctcgacggcgtgcaggacttcgagccgaccgccgccaccgtgctcaacctcacg
caggaccacctcgactggcacggcgacatgccggcctacgcggcggccaaggcgcgcatc
ttcggcgcgcgcgggctgatgatcctcaaccgcgacgacgccggcgtgatggcgatgctg
cccgcgcccgtcaaggtcaagctgcagcgtccgcagatccgcgcgcacgtcaccttcggc
gccgcgatgccgctgcgcccgggcgactacggcatcgagcgcgtcaacggcatggcctgg
ctggtgcgcgcgctggaagccgacgaaacccagaagcgcaagcgcggcgccgtggtcgag
gaagaaatcttcctgcagcgcctgatgccggccgatgcgctgcgcatccgcggccgccat
aacgccatgaacgcgctggccgccctcgcgctggcgagcgccgccggctgcccgctcggc
cccatgctctacggcctgcgcgaataccacggcgagccgcaccgcgtggaacccatcgcc
atcgtcgacgaggtcgagtacttcgacgacagcaagggcaccaacgtcggtgccaccgtg
gccgcgctggccggcctgggcgaagagcgacgcgtggtcgtgatcctcggcggcgaaggc
aagggacaggacttcgagccgctcgccgcgcccgtgcgccagtacgcgcgcgccgtggtg
ctcatcggccgcgacgcacccatcatcgaggccgcgctggcttccaccggcgtctcgctg
atgcacgcgggctccatggacgaagccgtgcaggccgccgccgcccgcgccaatccgggt
gatgcagtgctgctgtcaccggcctgcgcgagcttcgacatgttcagggactacgagcac
cgcgccgacgttttccgcgaggccgtgctggcctgggcggacagcccgcgcggactgggc
gattcttcgacgacggaggagcagctttga
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