Variovorax sp. PMC12: C4F17_15295
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Entry
C4F17_15295 CDS
T05380
Name
(GenBank) nucleoid occlusion factor SlmA
KO
K05501
TetR/AcrR family transcriptional regulator
Organism
vam
Variovorax sp. PMC12
Brite
KEGG Orthology (KO) [BR:
vam00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
vam03000
]
C4F17_15295
03036 Chromosome and associated proteins [BR:
vam03036
]
C4F17_15295
Transcription factors [BR:
vam03000
]
Prokaryotic type
Helix-turn-helix
TetR/AcrR family
C4F17_15295
Chromosome and associated proteins [BR:
vam03036
]
Prokaryotic type
Chromosome partitioning proteins
Inhibitors of FtsZ assembly
C4F17_15295
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SlmA-like_C
TetR_N
TetR_C_6
HTH_20
HTH_11
TetR
EcoEI_R_C
PEP-utilisers_N
TetR_C_13
HTH_5
TetR_C_15
BORCS7
Tfb2_C
TetR_C_20
Motif
Other DBs
NCBI-ProteinID:
AVQ82212
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Position
1:complement(3278948..3279598)
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AA seq
216 aa
AA seq
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MQNEETTSASGVETPAETLTPPARKRPKPGERRVQILQALASMLEQPGAERVTTAALAAR
LEVSEAALYRHFASKAQMFEGLIDFIEQSVFTLVNQILEREGATGAQQAGRILTLLVQFA
ERNPGMTRVMVGDALVFENERLQQRMNQFFDKIEATLRQVLRGAASADGSATPSVDAQVR
AAALTAFVVGQLQRFARSGFRRAPSEHLEATIALIV
NT seq
651 nt
NT seq
+upstream
nt +downstream
nt
atgcagaacgaagagacgaccagtgcttccggcgtagagacccctgctgaaacgctcacc
ccgccggcgcgcaagcgcccgaagccgggcgagcggcgcgtgcagatcctgcaggcgctt
gcttccatgcttgagcagccgggtgccgagcgggtcaccactgccgcgctggccgcgcgc
ctcgaggtgagcgaggccgcgctgtaccgccacttcgcgagcaaggcccagatgttcgag
ggcctgatcgatttcatcgagcagagcgtcttcacgctcgtcaaccagatcctcgagcgc
gagggcgccaccggcgcccagcaggccggccgcattctcacgctgctcgtgcagttcgcc
gagcgcaatcccggcatgacgcgcgtgatggtgggcgacgcgctggtgttcgaaaacgaa
cgcctgcagcagcgcatgaaccagttcttcgacaagatcgaggccacgctgcgtcaggtg
ctgcgcggcgccgccagcgccgacggttcggccacgccgagcgtcgatgcccaggtgcgc
gccgccgcgctcaccgccttcgtggtcgggcagctgcagcgctttgcacgttcggggttc
cggcgcgcaccgtcggagcacctggaagcgacgatcgcgctgatcgtctga
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