Variovorax sp. PMC12: C4F17_15330
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Entry
C4F17_15330 CDS
T05380
Name
(GenBank) ABC transporter permease
KO
K09690
homopolymeric O-antigen transport system permease protein
Organism
vam
Variovorax sp. PMC12
Pathway
vam02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
vam00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
C4F17_15330
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
vam02000
]
C4F17_15330
Transporters [BR:
vam02000
]
ABC transporters, prokaryotic type
ABC-2 type and other transporters
Homopolymeric O-antigen
C4F17_15330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC2_membrane
ABC2_membrane_3
Motif
Other DBs
NCBI-ProteinID:
AVQ82218
LinkDB
All DBs
Position
1:3285861..3286664
Genome browser
AA seq
267 aa
AA seq
DB search
MSQVHSNLHRSAWADWWEGTRRTDIWWTLAWFDIVLRYRRSMLGPLWLTLSMGVMIGGMG
PLYASLFGTHLDKFFPHLALGVIFWGLFSTIVTDACNAFVGSSNYLKQGYFPISLFVWRG
LSRNLIQFAHQIVLYIPVALWAGISLSWSALLVIPAFLILIVNAHALGLLLGLVCTRYRD
VTQIVTSVMQMLMFLTPVFWLPENLPGRAKYVLWNPFAQMLDLLRTPLMGGVAHIHSWIG
IGVWTVLCLSLASVLFVKYRRRVVYWL
NT seq
804 nt
NT seq
+upstream
nt +downstream
nt
atgagtcaagttcactccaaccttcaccgcagcgcatgggccgactggtgggaagggaca
cgccgcacggacatctggtggaccctcgcctggttcgacatcgtcctgcgctaccggcgc
tccatgctcggccctctttggctcacgctgagcatgggcgtcatgatcggcggcatgggc
ccgctgtatgcctcgctcttcggcacacacctcgacaagttctttccccatctggcgctc
ggcgtgatcttctggggcctgttctccacgatagtcaccgatgcctgcaacgccttcgtc
ggatcgtccaactatctcaagcagggctacttcccgatcagcctgttcgtatggcgaggc
ctgtcgcgcaacctgatccagttcgcccaccagatcgtgctgtacatccccgtggcgctc
tgggccggcatctccttgtcatggtcggcgctgctggtcattcccgctttcctgatcctc
atcgtcaacgcgcatgcgctcggccttctgcttggcctcgtctgcacccgctaccgcgac
gtgacgcagatcgtcaccagcgtcatgcagatgctgatgttcctgaccccagtgttctgg
ctgcccgagaacctcccgggccgcgccaagtacgtgctgtggaaccctttcgcacaaatg
ctcgacctgctgcgcaccccgctcatgggcggcgtggcccacattcacagctggatcggc
atcggcgtgtggaccgtgctgtgcctgtcgcttgccagcgtgctgttcgtcaaataccgc
cgtcgcgtcgtctactggctctga
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