Variovorax sp. PMC12: C4F17_15775
Help
Entry
C4F17_15775 CDS
T05380
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
vam
Variovorax sp. PMC12
Pathway
vam03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vam00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
C4F17_15775 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vam03021
]
C4F17_15775 (rpoC)
03400 DNA repair and recombination proteins [BR:
vam03400
]
C4F17_15775 (rpoC)
Enzymes [BR:
vam01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
C4F17_15775 (rpoC)
Transcription machinery [BR:
vam03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
C4F17_15775 (rpoC)
DNA repair and recombination proteins [BR:
vam03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
C4F17_15775 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AVQ82294
LinkDB
All DBs
Position
1:complement(3397904..3402139)
Genome browser
AA seq
1411 aa
AA seq
DB search
MKSLLDLFKQFTPDEHFDAIKIGMASPEKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIDLAAPCAHIWFLKSL
PSRLGLVLDMTLRDIERVLYFEAYVITDPGMTPLKKFGIMSEDDYDAKRKEYGDEFIAKM
GAEGIKDLLEGIELDSEIERLRGDLTGSEVKVKKNSKRLKVLEAFRKSGIKPEWMVLDVL
PVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNSRLRRLLELKAPEIIARNEKRMLQEA
VDSLLDNGRRGKAMTGANKRALKSLADMIKGKSGRFRQNLLGKRVDYSGRSVIVVGPTLK
LHQCGLPKLMALELFKPFIFSRLEAMGIATTIKAAKKEVESGTPVVWDILEEVIKEHPVM
LNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSVEAQMEART
LMLASNNVLFPASGEPSIVPSQDVVLGLYYTTRDRINGKGEGLIFSDIGEVQRALDANEV
ELTAKVAVRITEYTKNKETGEFTPSTSLVDTTVGRALLSEILPKGLPFSNINKALKKKEI
SKLINVSFRKCGLKETVVFADKLLQNGFRLATKAGISIAIDDMLVPAEKHGIIERSAKEV
KEIEQQYVSGLVTSGERYNKVVDIWGKAGDEVSKVMMAKLSKQKVIDRHGKEVEQESFNS
IYMMADSGARGSAAQIRQVAGMRGLMAKPDGSIIETPITANFREGLNVLEYFISTHGARK
GLADTALKTANSGYLTRRLVDVTQDLVVTEQDCGTHGGYLMRAIVEGGEVIESLRDRILG
RTAADDVLHPENRSVLLKAGEMFDEDTIEALEAQGVDEVKVRTALTCETRFGICATCYGR
DLGRGGLINIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAIASSVEAKSNGSIGFN
ATMRYVTNSKGELVVISRSGEIVIHDEHGRERERHKVPYGATLTVKADQQIKAGHVLANW
DPLTRPIITEFAGKTQFENVEEGLTVAKQVDEVTGLSTLVVIDPKRRGAAKVVRPQVKLI
DASGAEVKIPGTDHSVTIGFPIGALVQVRDGQDVGPGEVLARIPVEGQKTRDITGGLPRV
AELFEARSPKDKGMLAEMTGTVSFGKETKGKIRLQITDPEGTVWEDLVPKEKNILVHEGQ
VVNKGESVVDGPADPQDILRLLGSEELARYIVDEVQDVYRLQGVKINDKHIEVIVRQMLR
RVVVDNIGETGYISGEQVERSEMLNTNDALRAEGKIPATFTNLLLGITKASLSTDSFISA
ASFQETTRVLTEAAIMGKRDELRGLKENVIVGRLIPAGTGMAYHQARKVKDAMDEAERRA
IAESEAAELAGSGDSDAATTTVDASEGAATE
NT seq
4236 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcgctactcgacctgttcaagcaattcacgcccgatgagcatttcgatgccatc
aagatcggcatggcttcgcccgagaagatccgttcgtggtctttcggcgaggtgaagaag
ccggagacgatcaactaccgcacgttcaagcccgagcgcgacggcctgttctgcgccaag
atcttcggccccatcaaggactacgagtgcctgtgcggcaagtacaagcgcctgaagcac
cgcggcgtgatctgcgagaagtgcggcgttgaagtcacgcagaccaaggtgcgtcgcgag
cgcatgggtcacatcgacctggccgcgccctgcgcccacatctggttcctgaagtcgctg
ccgtcgcgcctgggcctcgtgctcgacatgacgctgcgcgacatcgaacgcgtgctgtac
ttcgaagcctacgtgatcaccgaccccggcatgaccccgctgaagaagttcggcatcatg
tccgaggacgactacgacgcgaagcgcaaggaatacggcgacgaattcatcgccaagatg
ggcgccgaaggcatcaaggacctgctcgaaggcatcgagctcgacagcgagatcgaacgc
ctgcgcggcgacctgaccggctccgaagtcaaggtcaagaagaactccaagcgcctgaag
gtgctggaagccttccgcaagtcgggcatcaagcccgagtggatggtgctcgacgtgctg
cccgtgctgccgccggacctgcgtccgctggtgccgctggacggcggccgcttcgcgacc
tccgacctgaacgacctgtaccgccgcgtcatcaaccgcaactcgcgcctgcgccgcctg
ctggagctgaaggctccggaaatcatcgcgcggaacgaaaagcggatgctgcaagaggct
gtcgactcgctgctggacaacggccgccgtggcaaggccatgacgggcgccaacaagcgc
gcgctgaagtcgctggccgacatgatcaagggcaagagcggccgcttccgccagaatctg
ctgggcaagcgcgtcgactactcgggccggtcggtcatcgtggtgggcccgacgctcaag
ctgcatcagtgcggcctgccgaagctgatggcgctcgagctgttcaagcccttcatcttc
tcgcgcctggaagccatgggcatcgcgacgacgatcaaggctgccaagaaggaagtcgaa
tcgggcacgccggtggtctgggacatcctggaagaggtcatcaaggagcacccggtcatg
ctgaaccgcgctccgacgctgcaccgcctgggcatccaggccttcgagccgatcctgatc
gaaggcaaggccatccagctgcacccgctcgtctgcgcggcattcaacgccgacttcgac
ggcgaccagatggccgtccacgtgccgctgtcggtggaagcgcagatggaagcccgcacg
ctgatgctggcctccaacaacgtgctgttcccggcttcgggcgaaccgtcgatcgttcct
tcgcaggacgtggtgctgggtctgtactacacgacccgcgaccgcatcaacggcaagggc
gagggcctgatcttctccgacatcggtgaagtgcagcgcgcactcgacgccaacgaagtc
gaactcaccgccaaggtggcagtgcgcatcacggagtacaccaagaacaaggaaaccggc
gaattcacgccgtcgacctcgctcgtggacaccaccgtgggccgtgccctgctgtccgag
atcctgccgaagggcctgccgttctcgaacatcaacaaggcgctgaagaagaaggaaatc
tccaagctcatcaacgtctcgttccgcaagtgcggcctgaaagagaccgtggtgttcgcc
gacaagctgctgcagaacggcttccgcctggcgaccaaggccggtatctcgatcgccatc
gacgacatgctggtgcctgccgagaagcacggcatcatcgagcgctccgccaaggaagtg
aaggagatcgagcagcagtacgtctccggtctcgtgacctccggcgaacgctacaacaag
gtggtggacatctggggcaaggccggcgacgaagtgtcgaaggtcatgatggccaagctg
tcgaagcagaaggtcatcgaccgccatggcaaggaagtcgagcaggagtccttcaactcg
atctacatgatggccgactcgggcgcccgcggttcagcggcccagattcgccaggtggcc
ggtatgcgtggcctgatggccaagccggacggctcgatcatcgagacgcccattaccgcg
aacttccgcgaaggcctgaacgtgctggagtacttcatctccacccacggtgcccgcaag
ggtctggccgacacggcgctgaagacggcgaactcgggttacctgacccgtcgtctggtc
gacgtgacgcaagacctggtcgtgaccgagcaggactgcggcacgcacggcggctacctg
atgcgcgccatcgtcgaaggcggtgaagtgatcgaatcgctgcgcgaccgtatcctcggc
cgcaccgcagccgacgacgtgctgcacccggaaaaccgctcggtgctgctgaaggccggc
gagatgttcgacgaggacaccatcgaggcgctggaagcgcaaggcgtcgacgaggtcaag
gtccgcaccgcgctgacctgcgaaacccgcttcggcatctgcgcgacctgctacggccgc
gacctgggccgcggcggcctgatcaacatcggcgaagccgtcggtgtgatcgccgcgcag
tccatcggtgaacccggcacgcagctgacgatgcgtaccttccacatcggcggtgccgct
tcgcgcgctgccatcgcctcgagcgtggaagccaagtcgaacggctcgatcggcttcaac
gccacgatgcgctacgtgaccaacagcaagggcgagctggtcgtgatttcgcgttcgggc
gagatcgtcatccatgacgagcacggccgcgagcgcgagcgtcacaaggtgccgtacggc
gccacgctgacggtcaaggcggaccagcagatcaaggccggccacgtgctcgccaactgg
gatccgctgacccgcccgatcattaccgagttcgccggcaagacgcagttcgagaacgtc
gaggaaggcctcacggttgcgaagcaggtggacgaagtgaccggcctgtcgaccctggtg
gtcatcgacccgaagcgccgcggcgctgccaaggtcgtgcgcccgcaggtgaagctcatc
gacgcttccggcgccgaagtgaagatcccgggcaccgaccactcggtgacgatcggcttc
ccgatcggcgcgctggtgcaggtgcgtgacggccaggacgtgggccccggcgaagtgctg
gcgcgtattccggtcgaaggccagaagacccgcgacatcaccggcggtctgccgcgcgtt
gccgagctgttcgaagcccgctcgccgaaggacaagggcatgctggccgaaatgaccggc
acggtgtcgttcggcaaggagaccaagggcaagatccgcctgcagatcaccgatccggaa
ggcacggtctgggaagacctcgtgccgaaggaaaagaacatcctggtgcacgaaggccag
gtggtgaacaagggcgaatccgtggtcgacggcccggcggacccgcaggacatcctgcgc
ctgctgggttccgaagaactggcgcgctacatcgtggacgaagtgcaggacgtgtaccgc
ctgcagggtgtgaagatcaacgacaagcacatcgaggtgatcgttcgccagatgctgcgc
cgcgtcgtggtcgacaacatcggcgagaccggctacatctccggcgaacaggtcgaacgc
agcgaaatgctcaacaccaacgacgccctgcgcgccgaaggcaagatccccgcgacgttc
accaacctgctgctgggtatcacgaaggcttcgctgtcgaccgactcgttcatctccgcc
gcttcgttccaggaaacgacgcgcgtgctgaccgaagccgcgatcatgggcaagcgcgac
gagctgcgcggcctgaaggaaaacgtcatcgtcggccgcctgattcccgcgggcaccggc
atggcgtaccaccaggcacgcaaggtcaaggacgccatggacgaggccgagcgccgcgcc
atcgccgaatcggaagcggccgagctggccggctccggcgacagcgatgcagcgaccacc
acggtcgacgccagcgaaggcgccgcgaccgaataa
DBGET
integrated database retrieval system
