KEGG   Variovorax sp. PMC12: C4F17_15975
Entry
C4F17_15975       CDS       T05380                                 
Symbol
tssC
Name
(GenBank) type VI secretion system contractile sheath large subunit
  KO
K11900  type VI secretion system protein ImpC
Organism
vam  Variovorax sp. PMC12
Brite
KEGG Orthology (KO) [BR:vam00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:vam02044]
    C4F17_15975 (tssC)
Secretion system [BR:vam02044]
 Type VI secretion system
  Imp/Vas secretion system core components
   C4F17_15975 (tssC)
SSDB
Motif
Pfam: VipB VipB_2
Other DBs
NCBI-ProteinID: AVQ82326
LinkDB
Position
1:3435827..3437320
AA seq 497 aa
MAEALEQSALKDVAYAGSDFSSLLQKEFKPRSDEAKSAVEAAVLTLAQQALSNSTVIGKD
VTKSIQAMIAAIDAKLTDQVNRIIHHPDYQKLESAWRGLHYMVNNTETDENLKIRVMDIS
KADLAKSLKKFKGAAWDQSPMFKKIYEQEYGQFGGEPFGALVGDYHFDQSPPDVELLGEM
AKIAASAHAPFITGASPNLMQMESWQELANPRDLTKIFLTPEYAGWRSLRESDDSKYIGM
CMPRFLARTPYGANTNPVEEFDFEEDTAGADHNKYAWANAAYAMATNINRSYKLYGWGSR
IRGIESGGAVENLPLHTFPSDDGGVDQKCPTEIAISDRREAELSKAGLLSMIHRKNSDFA
AFIGAQSLNKPAEYDDPDATANANLAARLPYLFACNRFAHYLKCIVRDKIGSFKEREDMQ
RWLNKWIMNYVDGDPANSSEITKSQKPLAAAEVVVEEVEGNPGYYTSKFFLRPHYQLEGL
TVSLRLVSKLPSAKGGA
NT seq 1494 nt   +upstreamnt  +downstreamnt
atggccgaagcactcgaacagagcgcgctgaaagatgtcgcgtacgcgggcagcgatttc
tcgtcgctgctgcagaaggaattcaagccgcgcagcgacgaagccaagagcgccgtcgag
gccgccgtgctcacgctggcgcagcaggcgctgagcaacagcaccgtcatcggcaaggac
gtgaccaagtcgatccaggccatgatcgccgcgatcgacgccaagctcaccgaccaggtc
aacaggatcatccaccaccccgactaccagaagctcgagagtgcgtggcgcggcctgcac
tacatggtgaacaacaccgagaccgacgagaacctgaagatccgggtgatggacatctcc
aaggcggaccttgccaagagcctgaagaagttcaagggcgcggcctgggaccagagcccg
atgttcaagaagatctacgagcaggagtacggccagttcggcggcgaacccttcggcgcg
ctggtgggcgactatcacttcgaccagagcccgcctgatgtggaactgctcggcgagatg
gccaagatcgccgcttcggcgcacgcgccgttcatcaccggcgcaagcccgaacctgatg
cagatggagtcctggcaggagctcgccaacccgcgcgacctgaccaagatcttcctcacg
ccggagtacgccggctggcgcagcctgcgcgagtcggacgactccaagtacatcggcatg
tgcatgccgcgcttcctggcgcgcacgccctacggcgcgaacaccaatccggtggaagag
ttcgacttcgaggaggacaccgccggcgccgaccacaacaagtacgcctgggccaatgcg
gcctacgcgatggcgaccaacatcaaccgctcatacaagctctacggctggggttcgcgc
atccgtggcatcgaatcgggcggcgcggtggagaacctgccgctgcacaccttcccgagc
gacgacggcggcgtggaccagaagtgccccaccgagatcgccatcagcgaccggcgcgag
gccgaactctcgaaggccggcctgctgtcgatgatccaccgcaagaactccgacttcgcg
gccttcatcggcgcccagtcgctcaacaagccggccgagtacgacgaccccgacgccacg
gccaacgccaacctggcggcgcgcctgccctacctgtttgcctgcaaccgctttgcgcac
tacctcaagtgcatcgtgcgcgacaagatcggcagcttcaaggagcgcgaggacatgcag
cgctggctcaacaaatggatcatgaactacgtggacggcgacccggccaactcctcggag
atcaccaagtcgcaaaagccgctggccgccgccgaggtggtcgtcgaggaagtggaaggc
aacccgggctactacacgtccaagttcttcctgcgtccgcactaccagctcgaaggcctc
acggtttcgctgcgcctggtgtcgaagctgccttccgccaagggcggcgcatga

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