KEGG   Variovorax sp. PMC12: C4F17_16065
Entry
C4F17_16065       CDS       T05380                                 
Symbol
clpV
Name
(GenBank) type VI secretion system ATPase TssH
  KO
K11907  type VI secretion system protein VasG
Organism
vam  Variovorax sp. PMC12
Pathway
vam03070  Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:vam00001]
 09130 Environmental Information Processing
  09131 Membrane transport
   03070 Bacterial secretion system
    C4F17_16065 (clpV)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:vam02044]
    C4F17_16065 (clpV)
Secretion system [BR:vam02044]
 Type VI secretion system
  Imp/Vas secretion system core components
   C4F17_16065 (clpV)
SSDB
Motif
Pfam: AAA_2 AAA_lid_9 AAA ClpB_D2-small AAA_16 AAA_5 AAA_22 Sigma54_activat AAA_7 Zeta_toxin AAA_14 TniB ATPase_2 NBD_SMAX1 NACHT nSTAND3 AAA_18 TsaE Cyclin_N CbiA DUF815 T2SSE Clp_N Hpr_kinase_C Torsin SRP54
Other DBs
NCBI-ProteinID: AVQ82344
LinkDB
Position
1:complement(3457899..3460574)
AA seq 891 aa
MSEISRTALFGKLNSLAYKAIEGATVFCKMRGNPYVELEHWFAQLLQAQDSDLHRVIQHY
GLDVSVIAKDMTAALDRLPRGATAISDFSPHIENAIERAWTYATLQFGEAQVRTGYLLVG
MLKTQSLRNPLFGLSKQFEKVKVEDLADNFAKICDASPEAQMRAQDGTGMGSGAPGEDSG
AMAPAAMGKGDALKKFAVDLTEKAKKGEMDPVTGRDEEIRQIVDILMRRRQNNPLLTGEA
GVGKTAVVEGFAQRLARGDVPPQLKDVKLLTLDIGLLQAGASMKGEFEQRLRQVIDEVQS
SPTPIILFIDEIHTLVGAGGAAGTGDAANLLKPALARGNLRTIGATTWAEYKKYIEKDPA
LTRRFQVVQVPEPDETKAILMLRGVASVLEKHHRVQLLDEAIEAAVKLSHRYIPARQLPD
KAVSLLDTACARVAVSQHATPPEVEDCMRRIEGLTVEQEIIGREEAIGIDVTKRAAQVAA
LLAESKVQLDALNARWQEEKGLVDRLLELRAKLRAGNKPVDAPGAGGEDRAALLAELHEL
QARIQAVQGESPLILPSVDEQAVASVVADWTGIPVGRMVKNEVEAVLKLADTLNQRVIGQ
KHGLEMIARRIQTSRARLDNPQKPIGVFMLCGTSGVGKTETALALAEALYGGEQNIITIN
MSEFQEAHTVSTLKGAPPGYVGYGEGGILTEAVRRRPYSVVLLDEVEKAHPDVHEIFFQV
FDKGWMEDGEGRMIDFKNTIILLTTNAGSELVMSMCRDPELLPDSNALADALKAPLMKVF
PPALLGRIVTIPYYPLSPDMMKKIVRLQLGRIKKRVEANHGVPFDYSDAVVDQVVARCQD
PESGGRVIDAILTNTVLPTISVEYLQRLASGGEIRRVALDVKDADFTYAFD
NT seq 2676 nt   +upstreamnt  +downstreamnt
atgagtgaaatcagccgcaccgcgcttttcggcaagctcaattcgctggcctacaaggcc
atcgaaggcgccaccgtgttctgcaagatgcgcggcaacccgtacgtggagctggagcac
tggttcgcgcagctgctgcaggcgcaggactccgacctgcatcgcgtgatccagcactac
ggcctggacgtgtcggtgatcgccaaggacatgacagccgcgctcgaccgcctgccgcgc
ggcgccaccgccatcagcgatttctccccgcacatcgagaacgccatcgagcgcgcgtgg
acctatgccaccctgcagttcggcgaggcgcaggtgcgcaccggctacctgctggtgggc
atgctcaagacgcagagcctgcgcaatccgctgttcggcctgtcgaagcagttcgagaaa
gtgaaggtcgaggacctggccgacaacttcgcgaagatctgcgacgcatcgcccgaggcg
cagatgcgcgcgcaggacggcaccggcatgggcagcggcgcgccgggcgaagattccggc
gcgatggccccggccgccatgggcaagggcgatgcgctgaagaagttcgcggtcgacctc
accgagaaggccaagaagggcgagatggacccggtgacgggccgcgacgaagagatccgc
cagatcgtcgacatcctcatgcgccggcgtcagaacaacccgctgctcaccggcgaggcc
ggcgtgggcaagaccgcggtggtcgaaggcttcgcgcagcgcctggcgcgcggcgacgtg
ccgccgcagctgaaggacgtgaagctgctcacgctcgacatcggcctgctgcaggccggc
gcgagcatgaagggcgagttcgagcagcggctgcgccaggtgatcgacgaggtgcagagc
tcgcccacgcccatcatcctgttcatcgacgagatccacacgctggtgggtgccggcggc
gcggccggcaccggcgatgcggccaacctgctgaagcccgcgctggcgcgcggcaacctg
cgcaccatcggcgccaccacctgggccgagtacaagaagtacatcgagaaagacccggca
ctcacgcggcgcttccaggtggtgcaggtgcccgagcccgacgagaccaaggccatcctc
atgttgcgcggcgtggccagcgtgctggagaagcaccatcgcgtgcagctgctcgacgaa
gccatcgaggcggcggtgaagctgagccaccgctacattcccgcgcgccagttgcccgac
aaggccgtgagcctgctcgacaccgcctgcgcgcgcgtggcggtgtcgcagcacgcgacg
ccgcccgaggtggaagactgcatgcgccgcatcgaggggctcacggtcgagcaggagatc
atcggccgcgaggaagccatcggcatcgatgtgacgaagcgggcggcgcaggttgccgcg
ctgctggccgagtcgaaggtgcagctcgatgcgctgaacgcgcgctggcaggaggagaag
gggctggtcgatcggctgctggagttgcgtgcgaagctgcgggcgggcaacaagccggtg
gatgcgccgggcgccgggggcgaggaccgggcggcgctgctggcggagctgcacgaactg
caagccaggattcaggcggtgcagggcgagtcgccgctcatcctgccttcggtcgacgaa
caggccgtggcctcggtcgtggccgactggaccggcattcccgtcggccgcatggtcaag
aacgaagtcgaggcggtcctcaagctcgccgacacgctcaaccagcgcgtgatcggccag
aagcacgggctggagatgatcgcgcgccgcatccagacctcgcgcgcgcggctggacaac
ccgcagaagcccatcggcgtgttcatgctctgcggcacctcgggcgtgggcaagaccgag
accgcgctcgcgctggccgaggcgctgtacggcggcgagcagaacatcatcaccatcaac
atgagcgagttccaggaggcgcacaccgtctccacgctcaagggcgcgccgccgggctac
gtgggctacggcgagggcggcatcctgaccgaggcggtgcgccgccggccctacagcgtg
gtgctgctcgacgaggtggagaaggcccaccccgacgtgcacgagatcttcttccaggtg
ttcgacaagggctggatggaagacggcgagggccgcatgatcgatttcaagaacaccatc
atcctgctgaccaccaacgccggcagcgaactggtgatgagcatgtgccgcgaccctgag
ttgctgccggactccaacgcgctggcagatgcgctgaaggcgccgctgatgaaggtgttt
ccgcccgcgctgctgggccgcatcgtcaccattccctactacccgctgtcgccggacatg
atgaagaagatcgtgcggctgcagctgggccggatcaagaagcgcgtggaagccaaccac
ggcgtgcccttcgactacagcgacgcggtggtcgaccaggtggtggcgcgttgccaggac
ccggagtcgggcgggcgggtgatcgacgcgatcctcaccaacaccgttctgccgacgatc
tctgtcgagtatttgcagcggctggcttcgggtggcgagatccggcgggtggcgctggat
gtgaaggacgctgacttcacttatgcctttgactga

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