Variovorax sp. PMC12: C4F17_16860
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Entry
C4F17_16860 CDS
T05380
Name
(GenBank) transporter
KO
K10439
ribose transport system substrate-binding protein
Organism
vam
Variovorax sp. PMC12
Pathway
vam02010
ABC transporters
vam02030
Bacterial chemotaxis
Brite
KEGG Orthology (KO) [BR:
vam00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
C4F17_16860
09140 Cellular Processes
09142 Cell motility
02030 Bacterial chemotaxis
C4F17_16860
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
vam02000
]
C4F17_16860
Transporters [BR:
vam02000
]
ABC transporters, prokaryotic type
Saccharide, polyol, and lipid transporters
Ribose transporter
C4F17_16860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peripla_BP_4
Peripla_BP_1
Motif
Other DBs
NCBI-ProteinID:
AVQ82487
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Position
1:3649992..3651038
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AA seq
348 aa
AA seq
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MRRNFLKSAAAAGIGLAGASALAQQQAAAPAAGAGLRGNASDVYVMNVMVSGVEYWFPVY
EMMKQLGRTLGVKTRYTGTPEYDVNKQLASFEQELARKPAGILLHPMNPDPFIEPINRAA
AMGIPVVTFAADSPNSKRTSFITSDNDREGTQAADAIAASMGGKGEYAVLENPGQDNHDR
RIAAFVNRMKTKHPGMKLVGRAASNQDPNKAYQAVLSLAQANPNLGALFMPEANSALGAA
QAKVETKKNIKVMCCDVNAKILDMIKSGDVFGSINPNQGMQGYMGMMMLFLAKNPTLIDP
MNDAKRNGTNPMSVPFLDNGLAVVSKANADDFYWDKYLARRGTKGIGE
NT seq
1047 nt
NT seq
+upstream
nt +downstream
nt
atgaggcgtaatttcctgaagtccgcggcggccgccggtatcggcctggccggtgcgagc
gcgcttgcgcagcagcaagcggcagcccccgccgcgggcgccggcctgcgcggcaacgcc
agcgacgtctacgtgatgaacgtgatggtgtcgggcgtggagtactggtttccggtctac
gaaatgatgaagcagctcggccgcacgctgggcgtgaagacgcgctacaccggcacgccc
gagtacgacgtgaacaagcagctcgcgtccttcgagcaggaactggcgcgcaagccagcc
ggcatcctgctgcatccgatgaaccccgacccgttcatagagcccatcaaccgcgcggcg
gcgatgggcatccccgtcgtcaccttcgcggcagactcgcccaactccaagcgcacctcg
ttcatcacgtccgacaacgaccgcgaaggcacgcaggcggcggacgccatcgcggcttcg
atgggcggcaagggcgaatacgccgtgctggagaaccccggccaggacaaccacgaccgc
cgcatcgccgccttcgtcaaccgcatgaagaccaagcacccgggcatgaagctggtcggc
cgcgccgccagcaaccaggacccgaacaaggcctaccaggccgtgctgagcctggcgcag
gccaacccgaacctgggcgccctgttcatgcccgaggccaactcggcgctgggcgcggcg
caggccaaggtcgagaccaagaagaacatcaaggtgatgtgctgcgacgtgaacgccaag
atcctggacatgatcaagtcgggcgacgtgttcggctccatcaacccgaaccagggcatg
cagggctacatgggcatgatgatgctgtttctggccaagaacccgacgctcatcgacccg
atgaacgacgccaagcgcaacggcaccaacccgatgtccgtgcccttcctggacaacggc
ctggccgtggtcagcaaggccaacgcggacgacttctactgggacaagtacctcgcccgc
cgcggcaccaagggaatcggcgagtga
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