Variovorax sp. PMC12: C4F17_18070
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Entry
C4F17_18070 CDS
T05380
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
vam
Variovorax sp. PMC12
Pathway
vam03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vam00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C4F17_18070 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vam03019
]
C4F17_18070 (recQ)
03400 DNA repair and recombination proteins [BR:
vam03400
]
C4F17_18070 (recQ)
Enzymes [BR:
vam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C4F17_18070 (recQ)
Messenger RNA biogenesis [BR:
vam03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C4F17_18070 (recQ)
DNA repair and recombination proteins [BR:
vam03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
C4F17_18070 (recQ)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
HHH
Motif
Other DBs
NCBI-ProteinID:
AVQ82716
LinkDB
All DBs
Position
1:3913105..3914997
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AA seq
630 aa
AA seq
DB search
MSSLAPRPIDASGSSAPADILHEVFGYSQFRGAQQDIVDHVVGGGDALVLMPTGGGKSLC
YQIPAIARQRAGQGVAIVVSPLIALMHDQVGALHEAGVSAAFLNSTLDWEETQDVERRML
RGEITLLYAAPERVNTPRFLSQLDSLKERGKLSLFAIDEAHCVSQWGHDFRPEYRALTVL
HERYAGVPRIALTATADALTRADIVERLQLEEARQFVSSFDRPNIRYTIVEKKDATTQLL
RFIEREHEGDAGVVYCQSRKRVEDVAVTLRDAGINALPYHAGLDAAVRQKHQDRFLREEG
IVMVATIAFGMGIDKPDVRFVGHLDMPKNIEGYYQETGRAGRDGGPADAWMAYGLQDVVN
QRRMIDESPAGEEFKQVMRGKLDALLSLAEASDCRRVRLLGYFGEKSTPCGNCDNCLNPP
QVWDGTDAARKLLSTIYRVQQLSGISFGAGHIMDILRGKATEKVKQFGHERVSTFGIGAE
FSEVQLRGVLRQLIATGALAVDAEAFNTLKLTEGSRAVLKGEAQVTLRESVSSPAERKSR
REKTVKGAPSPAAAKLDDTGKKRFEALKAWRAEVAKEHNLPAYVIFHDATLAAIAERAPA
TLEDLQGISGIGTKKLEAYGSEVLRVCEAF
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
gtgtcctctctcgctccccgccccatcgacgcctccggcagcagcgctcccgccgacatc
ctccacgaggtcttcggctattcgcagttccggggggcccagcaggacatcgtcgaccac
gtggtgggcggcggcgacgcgctggtgctgatgcccaccggcggcggcaagtcgctgtgc
taccagattcccgccatcgccaggcagcgcgcggggcaaggcgtggcgatcgtggtgtcg
ccgctgatcgcgctgatgcacgaccaggtgggcgcgctgcacgaggccggcgtgagcgcg
gcctttctcaattccacgctcgactgggaagaaacgcaggacgtggagcgccgcatgctg
cgcggcgagatcacgctgctgtacgcggcacccgagcgggtgaacacgccgcgcttcctg
tcgcagctcgattcgctcaaggagcgcggcaagctgtcgctcttcgccatcgacgaggcg
cattgcgtgagccagtggggccacgacttccgccccgagtaccgcgcgctcaccgtgctg
cacgagcgctatgcgggcgtgccgcgcatcgcgctcacggccacggccgacgcgctcacg
cgggccgacatcgtcgagcggctgcagctggaagaggcgcgccagttcgtctccagcttc
gaccggccgaacatccgctacaccatcgtcgagaagaaagacgccaccacgcagctgctg
cgcttcatcgagcgcgagcacgaaggcgacgccggcgtggtctattgccagtcgcgcaag
cgggtggaagacgtggcggtgacgctgcgcgacgcaggcatcaacgccctgccctatcac
gcgggcctggacgcggcggtgcgccagaagcaccaggaccgcttcctgcgcgaggaaggc
atcgtgatggtcgcgaccatcgccttcggcatgggcatcgacaagcccgacgtgcgcttc
gtcgggcacctcgacatgccgaagaacatcgagggctactaccaggaaaccggccgcgcc
ggccgcgacggcggcccggccgacgcctggatggcctacggcctgcaggacgtggtgaac
cagcgccgcatgatcgacgagagccccgccggcgaagagttcaagcaggtgatgcgcggc
aagctcgacgcgctgctctcgctggccgaggccagcgactgccgccgcgtgcgcctgctg
ggctacttcggcgagaagagcacgccctgcggcaactgcgacaactgcctgaacccgccg
caggtgtgggacggcaccgatgccgcgcgcaagctgctgagcaccatctaccgcgtgcag
cagctgagcggcatcagcttcggcgcggggcacatcatggacatcctgcgcggcaaggcc
accgagaaggtcaagcagttcgggcacgagcgggtcagcaccttcggcatcggcgcggag
ttcagcgaggtgcagttgcgcggcgtgctgcgccagctgatcgccaccggcgcgctggcg
gtggacgcggaagcgttcaacacgctgaagctcaccgaaggctcgcgcgccgttctcaag
ggcgaggcgcaggtgacgctgcgcgaatcggtgtcgtcgccggcggagcgcaagtcccgg
cgcgagaagaccgtcaagggcgcgccctcgccggccgccgccaagctcgacgacaccggc
aagaagcgcttcgaggcgctcaaggcctggcgtgccgaggtggcgaaggaacacaacctg
ccggcctacgtgatcttccacgacgccacgctggcggccattgccgagcgcgcgccggcg
acgctcgaagacctgcagggcatcagcgggatcggcaccaagaagctcgaggcctacggg
tccgaagtgctgcgggtctgcgaagccttctga
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