Variovorax sp. PMC12: C4F17_19090
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Entry
C4F17_19090 CDS
T05380
Name
(GenBank) tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE
KO
K03650
tRNA modification GTPase [EC:3.6.-.-]
Organism
vam
Variovorax sp. PMC12
Brite
KEGG Orthology (KO) [BR:
vam00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vam03016
]
C4F17_19090
Transfer RNA biogenesis [BR:
vam03016
]
Eukaryotic type
tRNA modification factors
Other tRNA modification factors
C4F17_19090
Prokaryotic type
Methyltransferases
C4F17_19090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MnmE_helical
TrmE_N
MMR_HSR1
FeoB_N
Dynamin_N
RsgA_GTPase
Arf
Zeta_toxin
AIG1
Ras
ABC_tran
MCM
AAA_28
ABC_ATPase
Roc
AAA_29
Motif
Other DBs
NCBI-ProteinID:
AVQ82898
LinkDB
All DBs
Position
1:4127155..4128561
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AA seq
468 aa
AA seq
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MLARTTDPIVAIATASGRGAVGIVRVSGARLAPLIDAICGRALKPREATYLPFRDADGEP
VDHGLAIHFPSPNSFTGEDVLELQAHGGAVVLQLLLARCLEAAAEPDPVTGRPRLPGLRV
AEPGEFSQRAFLNGKIDLAQAEAIADLIDASTEAAARSAGRSLSGEFSREIHTLRDALIH
LRMLVEATLDFPEEEIDFLQKADAAGQLAKLQSQLAAVQQRARQGALLREGIKVVIAGQP
NAGKSSLLNALAGAELAIVSAVAGTTRDVVSQTIQIHGVPLHVADTAGLRESSDEVEQIG
VARAWGQIESADAVLFLHDLTRAALPDYAAADAEILAGLRRKLPASVPVLDVWNKQDAAP
SARPAEGIALSAKTGLGIEALREQLLAMAGWQAVPEGVYLARARHVQALAQVEAHLSMAA
SHLAAQAQLLDLLAEELRLAQNALNEITGEFGADDLLGVIFSRFCIGK
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atgctcgcccgtaccaccgatcccatcgtcgccatcgccaccgcctcggggcgtggggcg
gtcggcatcgtgcgggtgtcgggcgccaggctggcgccgctgatcgacgccatctgcggg
cgtgcgctcaagccgcgcgaggccacctacctgccgtttcgcgatgccgacggcgagccg
gtcgaccatggcctggccatccactttccctcgccgaattccttcaccggggaagacgtg
ctcgagctgcaggcgcacggcggcgcggtcgtgctgcaactgctgctggcgcgctgcctg
gaggcggcggcggagcccgacccggtcaccggccgaccgcgcctgcccggcctgcgcgtg
gccgagccgggcgagttcagccagcgagccttcctcaacggcaagatcgacctggcgcag
gccgaggccattgccgacctgatcgacgccagcaccgaagcggccgcgcgcagtgccggg
cgttcgctgtcgggtgagttctcgcgcgagatccacacgctgcgcgatgcgctgatccac
ctgcgcatgctggtcgaggccacgctcgactttccggaggaagagatcgatttcctgcag
aaggcggatgcggccgggcagctggcgaagctgcagtcgcaactggccgcggtgcagcag
cgcgcgcgccaaggcgccttgctgcgcgaaggcatcaaggtcgtgatcgcggggcagccc
aacgcgggcaagagctcattgctcaacgcactggccggcgccgagctggccatcgtgagc
gcggtggcgggcaccacgcgcgacgtggtctcgcagaccatccagatccacggcgtgccg
ctgcacgtggcggatacggccggcttgcgcgagagcagcgacgaggtcgagcagatcggc
gtcgcgcgcgcctggggccagatcgaaagcgcggacgccgtgctgttcctgcacgacctg
acccgggccgcgttgccggactacgcggccgccgacgccgagatcctggcgggcctgcgg
cgcaagctgccggcgagcgtgccggtgctggatgtctggaacaagcaggacgcggcgcct
tcggcacggcccgcagagggcatcgcgctgtccgccaagaccggcctgggcatcgaggcc
ctgcgcgaacagctgctggccatggccggctggcaggccgtgcccgagggcgtgtacctg
gcgcgcgcgcgccacgtgcaggcgctggcgcaggtcgaggcgcacctgtcaatggcagcc
agccacctggctgcgcaggcccagctgctcgatctgctggccgaggaactgcggctggcg
cagaacgcgctgaacgagatcacgggggagttcggtgccgatgacctgctgggagtcatc
ttttcgcgcttctgcattggcaaatag
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