Variovorax sp. PMC12: C4F17_19565
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Entry
C4F17_19565 CDS
T05380
Name
(GenBank) DNA topoisomerase III
KO
K03169
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
vam
Variovorax sp. PMC12
Brite
KEGG Orthology (KO) [BR:
vam00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vam03032
]
C4F17_19565
Enzymes [BR:
vam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
C4F17_19565
DNA replication proteins [BR:
vam03032
]
Prokaryotic type
DNA Topoisomerases
C4F17_19565
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_Crpt
SWIB
Toprim
Zn_ribbon_PADR1
HC2
Spore_SspJ
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
AVQ82982
LinkDB
All DBs
Position
1:complement(4232240..4235200)
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AA seq
986 aa
AA seq
DB search
MKTLVIAEKPSVAQDIVRALTPVAGKFDKHDEHFENDSYVVTSAVGHLVEIQAPEEFDVK
RGKWSFANLPVIPPHFDLKPVDKTKTRLNAVVKQAKRKDVTQLINACDAGREGELIFRLI
EQYAGGKSGLNKPVKRLWLQSMTPQAIRDGFDALRTEKQMQGLADAARSRSEADWLVGIN
GTRAMTAFNSRDGGFFLTTVGRVQTPTLSVVVEREEQIRKFVSRDYWEVHGSFAAEAGEY
PGKWFNPDWKKANAPLLANGEPDPEQRADRVWNEQEARAIADASRGKPATVTEESKPTTQ
ASPMLFDLTSLQREANGRFGFSAKTTLALAQSLYERHKALTYPRTDSRALPEDYLPVVKQ
TMGMLANSGMKHLAPFAKQAVDGNYVKPNKRIFDNAKVSDHFAIIPTLQAPSGLSEAEQK
LYDFVVRRFLSVFFPSAEYQVTTRISTVEQGGRKYPFRTDGKVLVKPGWLAIYGKEAQDD
EKEDDKDGKRLVPVKPGEIVKTESADIKGLKTRPPARYSEATLLGAMEGAGKTIDDDELR
EAMQEKGLGTPATRAATIEGLITEKYMLREGRELIPTAKAFQLMTLLRGLGVEELSKAEL
TGEWEYKLAQMEKGALSRDAFMREIAEMTEHIVKKAKEYDRDTVPGDYATLQTPCPNCGG
IVRENYRRYACTGKSGTGEDACGFSFGKSPAGRTFEVAEAEALLRDKHIGPLEGFRSKAG
WPFTSEIVIKFDDEAKNWKLEFDFGDDKNADTGEIVDFSDQDTVGPCPVCGAPVFEHGSN
YVCEKSVPTNAQPTPTCTFKTGKIILQQPVERAQMEKLLATGKTDLLDKFVSMRTRRAFK
AFLTWNAEEGKVTFEFAPREGGSKFPPRKTFGKAVPAGKTAAAKKVAAKKTPAAKKAPAA
KKAAAPRKPGAGLKPSESLAAVIGAEPVARTEVIKKLWDYIKANGLQDATNKRAINADAK
LKPVFGKDQVTMFELAGIVGKHLSAT
NT seq
2961 nt
NT seq
+upstream
nt +downstream
nt
atgaagaccttggtaatcgcagaaaagccgtcggtggcgcaggacatcgtccgcgccctc
acgccggtggccggcaaattcgacaaacatgacgagcatttcgagaacgacagctatgtc
gtgaccagcgctgtcggtcacctggtcgaaatccaggcgcccgaggaattcgacgtcaag
cgcggcaagtggagttttgccaacctgcccgtgattccgccgcacttcgacctgaagccg
gtcgacaagaccaaaacgcgcctgaacgcggtggtcaagcaggccaagcgcaaggacgtg
acgcagctcatcaacgcatgcgacgcgggccgcgagggcgagctgatcttccgcctgatc
gagcagtacgccggcggcaagtcggggctgaacaagccggtcaagcggctgtggctgcag
tcgatgacgccgcaggccatccgcgacggcttcgacgcgctgcgcaccgaaaagcagatg
cagggcctggccgacgccgcgcgctcgcgctccgaggccgactggctggtgggcatcaac
ggcacgcgcgccatgaccgcattcaattcgcgcgacggcggcttcttcctcacgaccgtg
ggccgcgtgcagacgccgaccctctccgtcgtggtggagcgcgaggaacagatccgcaag
ttcgtctcgcgcgactactgggaagtccacggcagcttcgcggccgaggccggcgagtac
cccggcaagtggttcaaccccgactggaagaaggccaacgcgccgctcctggccaacggc
gaacccgaccccgaacagcgcgccgaccgcgtatggaacgagcaggaagcccgcgccatc
gccgacgcctcgcgcggcaagcccgccaccgtcaccgaagaaagcaagcccaccacgcag
gcttcgccgatgctgttcgacctgacctcgctgcagcgcgaggccaacggccgcttcggc
ttcagcgccaagaccacgctggcgctggcgcagagcctgtacgagcgccacaaggcgctg
acctacccgcgtaccgattcgcgcgcgctgccggaagactatcttcccgtcgtcaagcag
accatgggcatgctcgccaacagcggcatgaagcacctggcgccgttcgccaagcaggcg
gtcgacggcaactacgtcaagcccaacaagcgcatcttcgacaacgccaaggtgtcggat
cacttcgccatcatcccgacgctgcaggcccccagcggcctgagcgaggccgagcagaag
ctgtacgacttcgtggtgcgccgcttcctgtcggtgttcttcccgagcgccgaataccag
gtcactacgcgcatcagcacggtggagcagggcggcaggaagtaccccttccgcaccgac
ggcaaggtgctggtgaagccgggctggctcgccatctacggcaaggaagcccaggacgac
gagaaggaagacgacaaggacggcaagcgcctcgtgccggtgaagccgggcgagatcgtg
aagaccgagtccgccgacatcaagggcctgaagacgcgcccgccggcgcgctactccgaa
gccacgctgctcggcgcgatggaaggcgcgggcaagaccatcgacgacgacgagctgcgc
gaagccatgcaggagaagggcctgggcacgccagccacgcgcgcggccaccatcgaaggc
ctgatcaccgagaaatacatgctgcgcgaaggccgcgagctgattcccacggccaaggcc
ttccagctgatgacgctgctgcgcggcctcggcgtggaagaactctccaaggccgagctc
accggcgagtgggaatacaagctcgcgcagatggagaagggcgcgctcagccgcgacgcc
ttcatgcgcgagatcgccgagatgacggagcacatcgtcaagaaggcgaaggaatacgac
cgcgacaccgtgccgggcgactacgccaccctgcagacgccgtgccccaactgcggcggc
atcgtgcgcgagaactaccgccgctacgcctgcaccggcaagagcggcaccggcgaggac
gcctgcggcttctcgttcggcaagtcgccggccgggcgcaccttcgaagtggccgaagca
gaggcgctgctgcgcgacaagcacatcggcccgctggagggcttccgctccaaggccggc
tggcccttcacttccgagatcgtcatcaagttcgacgacgaggccaagaactggaagctg
gagttcgacttcggcgacgacaagaacgccgacaccggcgagatcgtcgacttcagcgac
caggacaccgtgggcccgtgcccggtgtgcggcgcgccggtgttcgagcacggcagcaac
tacgtctgcgagaagtcggtgccgaccaatgcgcaacccacgccaacctgcaccttcaag
accggcaagatcatcctgcagcagccggtggagcgcgcgcagatggaaaagctgctggcc
accggcaagaccgacctgctcgacaagttcgtgagcatgcgcacgcgccgcgccttcaag
gccttcctgacctggaacgccgaagagggcaaggtgaccttcgaatttgcaccgcgcgag
ggcggcagcaagttcccgccgcgcaagaccttcggcaaggccgtgcccgcgggcaagacg
gcggcagccaagaaggtggcggcgaagaagacgcccgccgccaagaaggcaccggctgcg
aagaaggccgccgcgccgcgcaagcctggcgcgggcctgaagcccagcgagtcgctggcc
gcggtgatcggcgccgaaccggtggcgcgcaccgaagtcatcaagaagctgtgggactac
atcaaggccaacggcctgcaggacgcgaccaacaagcgcgcgatcaatgccgacgccaag
ctcaagccggtgttcggcaaggaccaggtgacgatgttcgaactcgcgggcatcgtgggc
aagcacctctcggcgacctga
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