Variovorax sp. PMC12: C4F17_20590
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Entry
C4F17_20590 CDS
T05380
Symbol
xylF
Name
(GenBank) D-xylose ABC transporter substrate-binding protein
KO
K10543
D-xylose transport system substrate-binding protein
Organism
vam
Variovorax sp. PMC12
Pathway
vam02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
vam00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
C4F17_20590 (xylF)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
vam02000
]
C4F17_20590 (xylF)
Transporters [BR:
vam02000
]
ABC transporters, prokaryotic type
Saccharide, polyol, and lipid transporters
D-Xylose transporter
C4F17_20590 (xylF)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Peripla_BP_4
Peripla_BP_1
Peripla_BP_3
Rotamase_2
Motif
Other DBs
NCBI-ProteinID:
AVQ83169
LinkDB
All DBs
Position
1:4436026..4437048
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AA seq
340 aa
AA seq
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MQLKHTLAAMAFGLTAVGAMAQTVVGVSWSNFQEERWKTDEAAIKAELEKLGAKYISADA
GGSPEKQLGDIEGLMSKGAKALIVLAMDKDAILPAVTKATRQKVPVVAYDRLIEAPGVFY
ITFDNVEVGRMEAREVLKVKPKGNYVIIKGSPSDPNADFLRAGQQEVLDASIKKGDIKIV
GDEYTEGWKPEVAQKNMEQILTKNGNKVDAVVAANDGTAGGAVAALTAKGLRGIPVSGQD
ADFAALNRIALGTQTATIFKDSRELGREAAAAAIALSQGKPVDKAGTWNSGPKKVSLQSR
LLTPVPVTRDNLDVVVKAGWIKKDELCKGVTGASAPAACK
NT seq
1023 nt
NT seq
+upstream
nt +downstream
nt
atgcaactgaaacacaccctggccgccatggccttcggtctcacggccgtgggcgcgatg
gcgcagaccgtggtcggcgtgagctggtccaacttccaggaagagcgctggaagaccgac
gaggccgccatcaaggccgaactcgagaagctcggcgccaagtacatcagtgccgatgcg
ggcggctctccggagaagcagctgggcgacatcgagggcctgatgtcgaagggcgccaag
gcgctcatcgtgctggcgatggacaaggacgccatcctgccggcggtgaccaaggccacg
cgccagaaggtgcccgtggtggcgtacgaccggctgatcgaggcgccgggcgtcttctac
atcaccttcgacaacgtcgaggtcggccgcatggaagcgcgcgaggtgctcaaggtcaag
cccaagggcaactacgtgatcatcaagggctcgccgagcgacccgaacgccgacttcctg
cgcgccggccagcaggaggtgctcgacgcctccatcaagaagggcgacatcaagatcgtc
ggcgacgaatacaccgaaggctggaagcccgaagtcgcgcagaagaacatggagcagatc
ctcaccaagaacggcaacaaggtcgacgcggtggtggcggccaacgacggcacggcgggc
ggcgcggtggcggcgctcacggccaagggcctgcgcggcattccggtgtcgggccaggac
gccgacttcgcggcgctcaaccgaatcgcgctgggcacccagaccgcgaccatcttcaag
gactcgcgcgaactcggccgcgaagccgccgccgcggccatcgcgctgtcgcagggcaag
ccggtcgacaaggccggcacctggaactccggtccgaagaaggtctcgctgcaatcgcgc
ctgctgacgccggtgcccgtgacacgcgacaacctcgacgtcgtggtcaaggccggctgg
atcaagaaggacgagctctgcaagggcgtgacgggcgccagcgcgcccgcggcctgcaag
tag
DBGET
integrated database retrieval system
