Variovorax sp. PMC12: C4F17_20745
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Entry
C4F17_20745 CDS
T05380
Name
(GenBank) efflux transporter periplasmic adaptor subunit
KO
K18306
membrane fusion protein, multidrug efflux system
Organism
vam
Variovorax sp. PMC12
Pathway
vam02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
vam00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
C4F17_20745
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
vam02000
]
C4F17_20745
Transporters [BR:
vam02000
]
Other transporters
Accessory factors involved in transport [TC:
8
]
C4F17_20745
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-barrel_RND_2
BSH_RND
YknX_C
Beta-barrel_RND
RND-MFP_C
BSH_CzcB
CzcB_C
Biotin_lipoyl
BSH_CusB
HH_MFP_RND
UBA_At5g58720
Beta-barrel_YknX
KxDL
HH_EMRA
Motif
Other DBs
NCBI-ProteinID:
AVQ83197
LinkDB
All DBs
Position
1:complement(4472331..4473440)
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AA seq
369 aa
AA seq
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MNKQSRAWLGAGLATLVLGGAGYGLVTKLEPAHAQDAGMPPAKVAVATARKTEVARFLSG
IGTLEANRQVEVPAELEGRVAKILFTPGGQVRAGQLLVQLNDAPEQGDLERLTAQRANAK
ALLERTRRLLPQQAATQEQLEQAQAAFDQASGDLRRAQAVLEQKRIKAPFDGVLGIRRVN
LGQFVRAGDALVSLTDSRTLFANLTLPETALPMLQRNQQVALSVDAYPGRVFQGRLSTIE
PQIGSDTRTVRLQATIDNADGALTPGMFVNGKVALPARTDAITVPETAITYSTHGDSVFV
VRPADKGDGFTAQQVFVKAGERQDGLVVIETGLAPGDKVVTSGQLRLYTGAAVMPTAKDT
LALAQEPRP
NT seq
1110 nt
NT seq
+upstream
nt +downstream
nt
atgaacaagcaatcaagggcgtggctgggcgctggcctggcgacattggtactgggggga
gccggctacgggctcgtcacgaagctcgagccggcacacgcgcaggacgctggcatgccg
ccggccaaggtggccgttgccaccgcgcggaagacggaggtggcgcgcttcctcagcggc
atcggcacgctggaggccaaccggcaggtcgaggtgccggccgagttggagggccgcgtc
gcgaagatcctcttcacgcccggcggccaggtgcgcgcagggcagctgctggtgcagctc
aacgacgcgcccgagcaaggcgacctggagcgcctgacggcccagcgcgccaatgcgaag
gcgctgctggagcgcacgcgccgcctgctgccgcagcaggccgccacgcaggaacagctc
gaacaggcgcaggccgccttcgaccaggccagcggcgacctgcggcgcgcccaggccgtg
ctggagcagaagcgcatcaaggcgccgttcgacggcgtgctcggcatccgccgcgtcaac
ctcggccagttcgtgcgggccggcgatgcgctggtatcgctgaccgacagccgcacgctg
ttcgccaacctcacgctgcccgagacggcgctgcccatgctccagcgcaaccagcaggtg
gcgctgtcggtcgatgcgtatccgggccgggtgttccagggcaggctcagcaccatcgag
ccgcagatcggcagcgacacacgcaccgtgcgcctgcaggccaccatcgacaacgcagac
ggcgcgctcacgcccggcatgttcgtcaacggcaaggtcgcgctgcctgcacgcaccgac
gccatcaccgtgcccgagacggccatcacctacagcacgcacggcgactcggtcttcgtg
gtgcggcccgccgacaagggcgacggcttcaccgcgcagcaggtgttcgtgaaggccggc
gagcggcaggatgggctggtcgtgatcgagacgggcctcgcgcccggcgacaaggtcgtc
acctccggccagctgcgcctgtacaccggcgcggccgtgatgccgacggccaaggacacg
ctggccctcgcacaggaacccaggccatga
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