Variovorax sp. PMC12: C4F17_21000
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Entry
C4F17_21000 CDS
T05380
Name
(GenBank) nodulation protein NodJ
KO
K09694
lipooligosaccharide transport system permease protein
Organism
vam
Variovorax sp. PMC12
Pathway
vam02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
vam00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
C4F17_21000
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
vam02000
]
C4F17_21000
Transporters [BR:
vam02000
]
ABC transporters, prokaryotic type
ABC-2 type and other transporters
Lipooligosaccharide transporter
C4F17_21000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC2_membrane
ABC2_membrane_3
Peptidase_M75
Motif
Other DBs
NCBI-ProteinID:
AVQ83241
LinkDB
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Position
1:complement(4534397..4535236)
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AA seq
279 aa
AA seq
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MDTTTTTTTKTNAPASPSVWRAPEISLRWWPVFLRNLLVWRKLAIPSLIGNIAEPLIWLV
AFGYGMGALVGQVAVDGVKVPYILFLASGSICMSAMNAASFEALYSAFSRMHVQKTWDGI
MNAPVGLDDIVLAEMLWAAFKSIFTVTAILFVMLGLGISHSPKLIVAWMVLVGAGITFSS
IALIFNALAKGYDFFTYYFTLFMTPMMFLSGVFFPLEQLPSAVKAVAAWLPLTNAVALVR
PLFMDQWPAGWWVHAAVLAVYAVVAFWIALALTRKRFRG
NT seq
840 nt
NT seq
+upstream
nt +downstream
nt
atggacacgacaaccaccacaacaacaaaaacgaacgcgcccgcttcgccctcggtctgg
cgcgcgcccgaaatctcgctgcgctggtggccggtgttcctgcgcaacctgctggtgtgg
cgcaagctggccattcccagcctgatcggcaacatcgccgagccgctgatctggctggtg
gccttcggctacggcatgggcgcgctggtgggtcaggtggcggtcgacggcgtgaaggtg
ccgtacatcctgttcctggcgagcgggtcgatctgcatgagcgcgatgaacgcggcgagc
ttcgaggcgctgtactcggcgttctcgcgcatgcacgtgcagaagacctgggacggcatc
atgaacgcgccggtcgggctcgacgacatcgtgctggccgagatgctgtgggcggcgttc
aagtcgatcttcacggtcacggccatcctgttcgtgatgctcgggctgggcatcagccac
agcccgaagctcatcgtcgcgtggatggtgctggtgggcgcgggcatcaccttctcgtcg
attgcgctgatcttcaacgcgctggccaagggctacgacttcttcacctactacttcacg
ctgttcatgacgccgatgatgttcctgagcggcgtgttctttccgctcgaacagctgccc
tccgcggtcaaggccgtggcggcctggctgccgctgacgaatgcggtggcgctggtgcgg
ccgctgttcatggaccagtggccggcaggctggtgggtgcatgcggcggtgctggcggtg
tacgcggtcgtcgccttctggatcgcgctggcgttgacgcgcaagcggttcaggggctga
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