Variovorax sp. PMC12: C4F17_21075
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Entry
C4F17_21075 CDS
T05380
Name
(GenBank) ABC transporter ATP-binding protein
KO
K02052
putative spermidine/putrescine transport system ATP-binding protein
Organism
vam
Variovorax sp. PMC12
Pathway
vam02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
vam00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
C4F17_21075
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
vam02000
]
C4F17_21075
Transporters [BR:
vam02000
]
ABC transporters, prokaryotic type
Mineral and organic ion transporters
Putative spermidine/putrescine transporter
C4F17_21075
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Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
TOBE_2
SMC_N
AAA_29
AAA_25
AAA_22
RsgA_GTPase
nSTAND1
nSTAND_NTPase5
AAA_16
AAA_23
AAA_33
MMR_HSR1
NACHT
AAA_18
Rad17
AAA_14
AAA_28
Motif
Other DBs
NCBI-ProteinID:
AVQ83253
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Position
1:complement(4548301..4549329)
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AA seq
342 aa
AA seq
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MSLLLDNVNYNYPGSTHGLHDVSLDVRTGELVAVIGPSGSGKSTLLKLVSGLETGHTGRI
ALDGEDMSRTPVHQRNIGMVFQSYALFPHLSVLDNVAYGLKLRKVAATERRQRAQELLDI
VGLGDFAQRAVAQLSGGQQQRVALARALAIDPRALLLDEPLSALDASVRGHLRDQIRAIQ
QRFNATTLLVTHDQEEALVMADRVAMLKDGRLLQIATPRDIYENPASRAVAEFVGLSTIL
PAKVAAPGRLDLGFAELFADTGQRAFGTAVHVLVRPEHIRADPAADAVNRLAGSTRAQRY
LGALTRYDFEVPGAARPFLAESPAPAVEAIAIAPGHIRLLDH
NT seq
1029 nt
NT seq
+upstream
nt +downstream
nt
atgagcctcctactcgacaacgtcaactacaactatcccggcagcacgcacggcctgcac
gacgtgtcgctcgacgtgcgcaccggcgagctggtcgcggtgatcggccccagcggctcc
ggcaagtcgacgctgctgaagctggtgtcgggcctggagacgggccacaccggccgcatc
gcgctcgacggcgaagacatgtcgcgcacgcccgtgcaccagcgcaacatcggcatggtg
ttccagagctacgcgctgttcccgcacctgagcgtgctcgacaacgtggcctacgggctc
aagctgcgcaaggtggcggccaccgaacgacgccagcgcgcgcaggagctgctcgacatc
gtggggctgggcgactttgcgcagcgcgccgtggcgcagctttcgggcggccagcagcag
cgcgtggccttggcgcgcgccctggccatcgacccgcgcgccctgctgctcgacgagccg
ctgtcggcgctcgacgccagcgtgcgcggccacctgcgcgaccagatccgcgccatacag
cagcgcttcaacgccaccacgctgctggtcacgcacgaccaggaagaagcactggtcatg
gccgaccgcgtcgccatgctcaaggacggccggctgctgcagatcgccacgccgcgcgac
atctacgagaaccccgcgagccgcgcggtggccgagttcgtcgggctctcgacgatcctg
cccgccaaggtggccgcgccgggccggctggacctgggctttgccgaactcttcgccgac
accggccagcgcgccttcggcaccgcggtgcacgtgctggtgcgccccgagcacatccgc
gccgacccggcagccgacgccgtgaaccgtctcgcgggcagcacccgcgcgcagcgctac
ctgggtgcgctcacgcgctacgacttcgaggtgccgggcgcggccaggcccttccttgcc
gaatcgcccgcgccggccgtggaggccatcgccatcgcgcccgggcacatccgtttactc
gaccactga
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