Variovorax sp. PMC12: C4F17_21205
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Entry
C4F17_21205 CDS
T05380
Name
(GenBank) long-chain fatty acid--CoA ligase
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
vam
Variovorax sp. PMC12
Pathway
vam00061
Fatty acid biosynthesis
vam00071
Fatty acid degradation
vam01100
Metabolic pathways
vam01212
Fatty acid metabolism
vam02024
Quorum sensing
vam04146
Peroxisome
Module
vam_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
vam00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
C4F17_21205
00071 Fatty acid degradation
C4F17_21205
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
C4F17_21205
09145 Cellular community - prokaryotes
02024 Quorum sensing
C4F17_21205
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
vam01004
]
C4F17_21205
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
vam04147
]
C4F17_21205
Enzymes [BR:
vam01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
C4F17_21205
Lipid biosynthesis proteins [BR:
vam01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
C4F17_21205
Exosome [BR:
vam04147
]
Exosomal proteins
Exosomal proteins of breast milk
C4F17_21205
Exosomal proteins of breast cancer cells
C4F17_21205
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C_3
Rhabdo_matrix
Motif
Other DBs
NCBI-ProteinID:
AVQ83274
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All DBs
Position
1:4577857..4579713
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AA seq
618 aa
AA seq
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MQGLWDLNTFEPRLDVVVPGDTIPAMFWNAVKQRGDTVWMRQKELGIWRSWSWHQTADAV
REIAAGLQAIGFAPGECASILSNTVIEWVLADLAVLSCGGVSNGIYPTDAASQVHYLCED
SRTTVLFVEDDEQLDKALEVRAGLPGLRRIVVFDMEGLRDLDDPGVMSLDALRELGRARL
SADPRAVERTVAACRPEDLAILVYTSGTTGKPKGAMHSHAGLVYTARGYNTLIAQDEKDE
RMCFLPLCHIAERMGGEYFAMYTGSILNFVENPETVPENVREIAPTVFTAVPRVWEKFYS
GVMIALKEASPLQQAAYRWSIGVGEAIAAKVLAGEPVGAGLKLKFRLARLLALDNARKLI
GIHRSRFLVTGAAPISPELVKWYLALGVPMLEVWGMTESCGASTAVPATRIKPGSIGPAT
GYNEVRIDPVTGEILVRGPNVFMGYLNLPEKTAETIDAEGWLHTGDVGVMDEDGYFRITD
RMKDIIITAGGKNVTPSELENELKFSLYITDAVVIGDKKPYLTVIVMIDQENVEKFAQDN
DVPFSNYESLTRTKEVLDLIQGEIDRVNAKFARVEQIKKFFLLETQLSAEDEELTPTMKL
KRKLVQTKYAERIEAMYR
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atgcaaggactctgggacctcaataccttcgaaccgcgcctcgacgtcgtcgtgcccggc
gacaccattcccgcgatgttctggaatgccgtcaagcagcgcggcgacaccgtctggatg
cggcagaaagagctcggcatctggcgcagctggagctggcaccagaccgccgacgccgtg
cgcgagatcgcggccggcctgcaggccatcggctttgcgcccggcgagtgcgcctccatc
ctgtcgaacaccgtcatcgaatgggtgctggcagacctggccgtgctcagctgcggcggc
gtgtccaacggcatctacccgaccgacgccgcctcgcaggtgcactacctgtgcgaagac
tcgcgcaccaccgtgctcttcgtggaagacgacgagcagctcgacaaggcgctcgaagtg
cgcgccggcctgccgggcctgcgccgcatcgtggtgttcgacatggaaggcctgcgcgac
ctcgacgacccgggcgtgatgagcctcgatgcgctgcgcgaactcgggcgcgcgcgcctg
tcggccgatccgcgggcggtggagcgcaccgtggccgcctgccggcccgaagacctcgcc
atcctcgtctatacatcgggcaccaccggcaagcccaagggcgccatgcacagccacgcg
gggctggtgtacaccgcgcgcggctacaacacgctcatcgcgcaggacgagaaagacgag
cgcatgtgcttcctgccgctgtgccacatcgccgagcgcatgggcggtgagtacttcgct
atgtacaccggctccatcctcaacttcgtcgagaaccccgagaccgtgccggagaacgtg
cgcgagatcgcgcccaccgtgttcaccgcggtgccgcgcgtgtgggagaagttctattcg
ggcgtgatgatcgcgctgaaggaagcgagcccgctgcagcaggccgcctacaggtggagc
atcggcgtgggtgaagccatcgcggcgaaagtgctggccggcgagccggtcggcgcgggg
ctcaagctcaagttcaggctcgcgcggctgctggcgctggacaacgcgcgcaagctcatc
ggcatccatcgctcgcgctttctcgtgacgggcgcggcgccgatttcgcccgagctggtc
aagtggtacctggcgctcggcgtgccgatgctggaggtgtggggcatgacggagtcctgc
ggcgcttccaccgcggtgccggcgacgcgcatcaagcccggctccatcgggccggccacg
ggctacaacgaggtgcgcatcgacccggtcaccggcgagatcctggtgcgcggccccaat
gtcttcatgggttacctcaacctgccggagaaaacggccgagacgatcgacgccgaaggc
tggctgcacacgggcgacgtcggcgtgatggacgaggacgggtatttccgcatcaccgac
cggatgaaagacatcatcatcacggcaggtggcaagaacgtcacgccgagcgagctggag
aacgaactcaagttcagcctctacatcaccgacgccgtggtgatcggcgacaagaagccc
tacctcacggtgatcgtcatgatcgaccaggagaacgtcgagaagtttgcgcaggacaac
gacgtgccgttcagcaactacgagagcctgacgcgcacgaaggaagtgctggacctaata
cagggcgagatcgaccgcgtcaacgccaagttcgcgcgcgtggagcagatcaagaaattc
ttcctgctcgagacgcagctgagcgccgaggacgaggagctcacgcccacgatgaagctc
aagcgcaagctggtgcagaccaagtacgccgagcgcatagaagccatgtaccggtga
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