KEGG   Variovorax sp. PMC12: C4F17_21285
Entry
C4F17_21285       CDS       T05380                                 
Name
(GenBank) peptidase
  KO
K07258  serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
Organism
vam  Variovorax sp. PMC12
Pathway
vam00550  Peptidoglycan biosynthesis
vam01100  Metabolic pathways
Brite
KEGG Orthology (KO) [BR:vam00001]
 09100 Metabolism
  09107 Glycan biosynthesis and metabolism
   00550 Peptidoglycan biosynthesis
    C4F17_21285
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01002 Peptidases and inhibitors [BR:vam01002]
    C4F17_21285
   01011 Peptidoglycan biosynthesis and degradation proteins [BR:vam01011]
    C4F17_21285
Enzymes [BR:vam01000]
 3. Hydrolases
  3.4  Acting on peptide bonds (peptidases)
   3.4.16  Serine-type carboxypeptidases
    3.4.16.4  serine-type D-Ala-D-Ala carboxypeptidase
     C4F17_21285
Peptidases and inhibitors [BR:vam01002]
 Serine peptidases
  Family S11: D-Ala-D-Ala carboxypeptidase A family
   C4F17_21285
Peptidoglycan biosynthesis and degradation proteins [BR:vam01011]
 Peptidoglycan biosynthesis and degradation
  DD-Carboxypeptidase/DD-Endopeptidase (Low molecular weight PBP)
   C4F17_21285
SSDB
Motif
Pfam: Peptidase_S11 PBP5_C Beta-lactamase2 Peptidase_S13
Other DBs
NCBI-ProteinID: AVQ84737
LinkDB
Position
1:4591475..4592644
AA seq 389 aa
MNRFLGALRALVITAAASISLIAAAQVPAPPEIAARSYLLLDVTANQILAQKDIDSPIEP
ASLTKLMTAYVVFDALRAKKISLTQTLPVSPRAWKMPGSRMFIDPKMQVPVEDLIKGLIV
QSGNDATVALAEGVGGTVEHFVEMMNAQAKVLGMKNTVYKNPEGLTTPGHTTTARDLSTL
ATHLVRDFPEEAKYYAIKKYRYPGTPSTNETNRNMLLFRDPTVDGLKTGHTDAAGYCMIA
TAKRDFPNLTGGRRLLSIVLGASSETVRANESQKLLNWGYTAYDAVRLFDAGQPAATPAV
WKGKDNTLKLGRPEAIVVAVPAGSASKIKTQVSRPDPLVAPFTKFQPVGSLKVTLDDQPV
ADVPLVALDAVEQAGVFGRAWDAVRLWIK
NT seq 1170 nt   +upstreamnt  +downstreamnt
atgaatcgtttccttggtgcgcttcgcgcgctggtcattaccgccgccgcatccatcagc
ctgattgccgccgcccaggtgccggccccccccgaaattgccgcccgcagctacctgctg
ctcgacgtgaccgcgaaccagatcctcgcgcagaaggacatcgacagcccgatcgagccg
gcgtctctgaccaagttgatgacggcctacgtcgtgttcgacgcgctgcgcgccaagaag
atttcgctgacgcagacgctgccggtcagcccgcgcgcctggaagatgcccggctcgcgc
atgttcatcgaccccaagatgcaggtgcctgtggaagacctgatcaaggggctgatcgtg
cagtcgggcaacgacgccacggtggcgctggccgaaggcgtgggcggcaccgtggagcac
ttcgtcgaaatgatgaacgcccaggccaaggtgctgggcatgaagaacacggtctacaag
aaccccgaaggcctgacgacgcccggccacaccaccacggcccgggacctgagcaccctg
gccacccacctggtgcgtgacttccccgaggaggccaagtactacgccatcaagaagtac
cgctacccgggtacgccgtcgaccaacgaaaccaaccgcaacatgctgttgttccgcgac
cccaccgtcgacggcctgaagaccggccataccgatgcggcgggctactgcatgatcgcc
accgccaagcgcgacttccccaacctgaccggcggccgccgcctgctgtcgatcgttctg
ggcgcctcgagcgagaccgttcgcgccaacgagtcgcagaagctgctgaactggggctac
acggcctacgacgccgtccgcctgttcgacgccggccagccggccgccacgcctgccgtc
tggaagggcaaggacaacaccctgaagctgggtcgtccggaagccatcgtcgtggccgtg
ccggcgggcagcgccagcaagatcaagacgcaggtgtcgcggcccgatccgctggtggcg
cctttcaccaagttccagccggtcggctcgctcaaggtgacgctggacgaccagcccgtg
gctgacgtgccgctggtggccctggatgcggtcgagcaggccggtgttttcggccgcgcc
tgggatgccgtgcggctctggatcaagtag

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