Variovorax sp. PMC12: C4F17_21845
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Entry
C4F17_21845 CDS
T05380
Name
(GenBank) transcriptional regulator
KO
K21703
LysR family transcriptional regulator, low CO2-responsive transcriptional regulator
Organism
vam
Variovorax sp. PMC12
Brite
KEGG Orthology (KO) [BR:
vam00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
vam03000
]
C4F17_21845
Transcription factors [BR:
vam03000
]
Prokaryotic type
Helix-turn-helix
LysR family
C4F17_21845
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Gene cluster
GFIT
Motif
Pfam:
LysR_substrate
HTH_1
Motif
Other DBs
NCBI-ProteinID:
AVQ83385
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Position
1:4689459..4690355
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AA seq
298 aa
AA seq
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MDVPRTNLDALQSFAVFADTLNFSESARLLHISQPALHAKVRKLAEQLDARLYMRIGGAL
ELTSAGEQVARHARELLALNQRFVKGLAAGRDQPVVTLAAGEGAYLYLLGKALSQFSGPG
ASPHLQLLTRNRDEAIQAVRAGQAQLGIAPLGTAPEDLAAVRLTVVGQVLVVPRAHALAS
RKSVRLRDLKDAQLIVPPEGRPHREMLGRLLQAESVPWQPSLEANGWELMLRFAQLGFGL
AVVNACCRIPKGLVAIPLQGYPPLEYHMFHGADRPPTPHAQRLMDALLTHRDHWKAAP
NT seq
897 nt
NT seq
+upstream
nt +downstream
nt
atggatgttcctcgcaccaatctcgacgcccttcagtctttcgcagtgttcgcggacacg
ctgaacttcagcgagtcggcgcgcctgcttcacatcagccagccggccctgcatgcgaaa
gtgcgaaaattggccgaacagcttgatgcaaggctgtacatgcggatcggtggcgcgctc
gagctcaccagtgcgggtgagcaggtcgcacggcatgcgcgggagctgctcgcgctcaac
caacgcttcgtcaaaggccttgccgctgggcgagaccagccggtcgtcacgctggctgcg
ggcgagggggcttatctctatctgctgggcaaggctctgtcgcagttctcgggtcctggc
gcctcgccgcacctgcaattgctcacgcgcaaccgggacgaagcaatacaggcggtgcgg
gccggacaggcgcaactcggcattgcgcccctgggcactgcgcctgaagacctggcggcg
gtgcgcctcacggtcgtgggccaggtactggtcgtaccgcgcgcgcatgccctggcttca
cgcaaatcggtgcgcctgcgcgacttgaaggacgctcaactgatcgtgccgccggaaggg
cggccgcaccgcgaaatgctgggccggctgcttcaggcggagtcggtgccgtggcagccg
tcgctcgaagccaatggctgggaactgatgctgcgtttcgctcagctgggtttcggactt
gccgtggtcaacgcttgctgccgcattccaaagggtctggtggcgattccgttgcagggc
tatccgccgctcgaatatcacatgttccacggtgccgatcgccctccgacaccgcacgca
cagaggctcatggacgcgctgctgacgcatcgagatcactggaaggccgcgccatga
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