Variovorax sp. PMC12: C4F17_22335
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Entry
C4F17_22335 CDS
T05380
Name
(GenBank) glycine--tRNA ligase subunit beta
KO
K01879
glycyl-tRNA synthetase beta chain [EC:
6.1.1.14
]
Organism
vam
Variovorax sp. PMC12
Pathway
vam00970
Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:
vam00001
]
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
C4F17_22335
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
vam01007
]
C4F17_22335
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vam03016
]
C4F17_22335
Enzymes [BR:
vam01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.14 glycine---tRNA ligase
C4F17_22335
Amino acid related enzymes [BR:
vam01007
]
Aminoacyl-tRNA synthetase
Class II (C/G)
C4F17_22335
Transfer RNA biogenesis [BR:
vam03016
]
Prokaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Other AARSs
C4F17_22335
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_synt_2f
DALR_1
HTH_68
HD
Motif
Other DBs
NCBI-ProteinID:
AVQ83469
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All DBs
Position
1:4796592..4798733
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AA seq
713 aa
AA seq
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MTSPMKNSLLVELFVEELPPKALKKLGDAFAGVLRDQLVAQGLAEAGSVLTPYASPRRLA
AHLTHVAERAADKAVSQKLMPVAVGLDASGQATPALLKRLGALGADASAVPGLKRAMDGK
AEALFYESTAKGATLAEGLQKALAEAIAKLPIPKVMSYQLESGCELPGWTSVSFVRPAHG
LVALHGDTVVPIEALGLKAGRDTHGHRFEAAVDPVVLRNADSYALQLQEEGAVIASFEAR
RAEIARQLAAAAVKVGGGSVPIHDDALLDEVTALVERPNVLVCSFEREFLEVPQECLILT
MKANQKYFPLLDASSRLTNKFLVVSNISPDDASAVIGGNERVVRPRLADAKFFFDQDRKK
SLASRVESLGKVVYHNKLGTQGERVERVMRIARGIAEKLGDPALAAQATQAAQLAKADLV
TDMVGEFPELQGTMGRYYARHDGLDAAVADAIEDHYKPRFAGDELPRNSVGLVVALADKL
ETLVGMFGIGNLPTGDRDPFALRRHALGVIRMLIEKDLPLGLDALLQDAAAQFGGIAGFD
SGRATGELQDFILDRLAGSLREQGASAQEVDAVLAPRPQRLGEVPKLLAAVRAFAALPAA
AALAAANKRIGNILKKAPEADAHVSELLLQEPAEKALHAAMAQVVPAANAQFEAGDYTAS
LQTLAALREPVDAFFDGVMVNAEQADLRLNRLGLLMSLHTAMNRVAQLERLAV
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atgacgagtcccatgaagaattccctgctggttgaactgtttgtcgaagaactgccgccc
aaggcgctgaagaagctcggcgacgcctttgcgggcgtgctgcgagaccagctcgtggcg
caaggcctggccgaggccggctcggtgctcacgccgtacgcctcgccgcgccgcctggcc
gcgcacctcacgcacgttgccgagcgcgccgccgacaaggctgtgtcgcagaagctcatg
cccgtggccgtgggcctcgacgcctcgggccaggccacgccggcgctgctcaagcgcctg
ggcgcgctgggtgccgacgcctcggccgtgcccggcctgaagcgcgcgatggacggcaag
gccgaagccctgttctacgaaagcaccgccaagggcgccacgctggccgaaggcctgcag
aaggcgctggcggaagccatcgccaagctgccgattcccaaggtcatgagctaccagctc
gaaagcggctgcgagctgccgggctggaccagcgtgagcttcgtgcgcccggcgcacggc
ctggtggcgctgcacggcgacaccgtggtgccgatcgaggccctgggcctgaaggccggc
cgcgacacccacggccaccgcttcgaggcggcggtcgatccggtcgtgctgcgcaacgcc
gacagctatgcgctgcagctgcaggaagaaggcgccgtcatcgccagcttcgaggcgcgc
cgcgccgaaatcgcgcgccagctggccgcggcggcggtgaaggtcggcggcggctcggtg
cccatccacgacgacgcgctgctcgacgaagtgaccgcgctggtcgagcgccccaacgtg
ctggtctgcagcttcgagcgcgagttcctcgaagtgccgcaggagtgcctgatcctcacg
atgaaggccaaccagaagtactttccgctgctcgacgcatcgagcaggctcaccaacaag
ttcctggtggtcagcaacatcagcccggacgacgcgagcgcggtcatcggcggcaacgag
cgcgtggtgcgcccgcgcctggccgacgccaagttcttcttcgaccaggaccgcaagaag
tcgctggcctcgcgcgtcgagtcgctgggcaaggtggtctatcacaacaagctgggcacg
cagggcgagcgcgtggagcgcgtgatgcgcatcgcgcgcggcatcgcggaaaagctgggc
gacccggcgctggccgcgcaagccacccaggccgcgcaactggccaaggccgacctcgtg
accgacatggtcggcgagttccccgagctgcagggcaccatgggccgctactacgccagg
cacgacggcctcgacgccgcggtggccgacgccatcgaggaccactacaagccgcgcttt
gccggcgacgagctgccgcgcaacagcgtgggcctggtggtcgcgctggccgacaagctg
gaaacgctggtcggcatgttcggcatcggcaacctgcccaccggcgaccgcgacccgttc
gcgctgcgccgccatgcgctcggcgtgatccgcatgctgatcgaaaaagacctgccgctg
ggcctcgatgcgctgctgcaggacgccgccgcgcagttcggcggcattgccggcttcgac
agcggccgcgccacgggcgagctgcaggacttcatcctcgaccgcctcgccggcagcctg
cgcgagcagggcgccagcgcgcaggaggtcgacgccgtgctggcaccgcgcccgcagcgc
ctgggcgaagtgcccaagctgctagcggcggtgcgcgcctttgccgccctgcccgccgcc
gccgccctggccgccgcgaacaagcgcatcggcaacatcctcaagaaggcccccgaggcc
gacgcgcacgtcagcgaactgctgctgcaggagcccgctgagaaggcgctgcacgcagcc
atggcgcaggtggtgcccgccgccaacgcgcagttcgaagccggcgactacaccgcctcg
ctgcagacgctggccgcgctgcgcgagccggtcgacgccttcttcgacggcgtgatggtc
aatgccgagcaggcagacctgcggctgaaccgcctgggcctgctgatgtcgctgcacacc
gcgatgaaccgcgtggcgcagctcgagcggctggccgtctga
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